Malt042324.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:38748493-38757794[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0001 0.0074 18.1 4.0 1 23 388 410 388 410 0.98 2 12 0.38 28 6.9 1.1 1 23 419 441 419 441 0.97 3 12 0.018 1.3 11.1 4.1 1 23 450 472 450 472 0.98 4 12 0.0077 0.56 12.2 2.4 1 23 484 506 484 506 0.98 5 12 1.9e-05 0.0014 20.4 0.6 1 23 515 537 515 537 0.98 6 12 7.9e-05 0.0057 18.5 1.7 1 23 546 568 546 568 0.99 7 12 0.12 8.5 8.5 5.6 1 23 577 599 577 599 0.99 8 12 9.9e-06 0.00072 21.3 0.5 1 23 638 660 638 660 0.98 9 12 0.00048 0.035 16.0 3.7 1 23 669 691 669 691 0.99 10 12 0.0013 0.097 14.6 6.2 1 23 700 722 700 722 0.99 11 12 0.0029 0.21 13.6 7.3 1 23 731 753 731 753 0.99 12 12 0.032 2.3 10.3 2.5 1 23 762 784 762 784 0.99
Sequence Information
- Coding Sequence
- ATGGAACCAGAAAACTTTAATAAGGAAGCATTTTGCAGACTGTGTCTTAATATTATAAGCAATACAAATTCTGAAGAAATAGAAACAGTCTCGAgagaaattttaaaagttattttgccaGATCTGATTTTGGAAGAGGAACAAAAACACCAGATGTGTAAAGCATGTTGTTCAAAGTTATTTACCGCTTTTAATTTCAAGTCGACATGTATGGGTACTGAGGATGTTATTAGTTCGTACATCAGTTCCACTCAAATGTCACTGATTGACCTAAAAGATGTTTATTTAATACTAAATGGAAATATTCAGTTAACCGATACATGGGAAAATCAGAGAATTTGTCGATTGTGTATTCAATGTGTAATAAACGGATTTGTGTCACTTAATGAAGTGGATAATGACATCATTGATGGAATCATACCTCAAGTGaaCATCAATGCTACCAAAGATCCTGTTATATGCGGATCATGTTTTGATTCGCTTCGTATCCACAATGGTTTTGTAAAGAACTGTCGGGAAGCACAGGGAAAATACCAAAATGTAGATATACTGCCTTATATAAAAACGGAAGAGATTGAAGTTAAACTAGAAGATGGTCATGACGCACAGGAGAAATATAGAAACAGTGATAAGCAGCCTTATATTAGATCTGAACAGATGAAGATTAAGTCAGAAGATCAcgataaTTTAGATGaggaaataatggaaaacgaaaGGAAGCATATTTCTGAGAGTGTAGGAGAAACAAAGTGTGAATATATGCTTGATTCTCTTCACACCAGTGAAGGTTTTGTAAAGAATGACCTGGAAGCACAGGAAAGATATCAAAATGTAGATAAACCGCCTTATATAAAAACTGAGCAGATTGAAATCAAACTGGAGAATGGTTACGATATGCTAGagacatataaaaatattgatgagCAGGCTCATATTAAATCTGAGGAGATGGAAATTCAGTCGGAGGGAGAAGATCAAGATATTGATTCCTCTTCACAAACTTTAGAGGAGGAAACAATCGAAGAGAGAAAAGTGCAAATATCTGAAGATATAGGAGAAACAAAGGATGAATGTATGCTTATCAGTCTGACTGAAGCTCAAATAAACAAATGGGAAACTCCGTTAGATATATCATCGTGTGACCCTATTGAAATTGGGATATATAAGTGTAGCGtatgtgattataaaactaaacgaaaaaataatcTTAACAGGCATAAGTTAAAGCATAAAGATCCTTcggaaatccaaatgtacaaatgtgatatttGTACTTTTCAAACTAAATATATGGAATCTGTGAAAAGCCATCTGCTATTGCATAAAGACCCTTCtaaaatccaaatgtacaaatgtgatactTGTACATTTGAAACTAGATATAAGAATCACTTAAAAGATCATCAGTTAATACACAAAGATCCTTCTGAAATTGCACACAAAGAATTGTTCAAGTGTGATACATGTGATTTTGCTACTAGACATAAGAGTGGTCTGGAATACCATGAGTTAAAACACAAAGACCCTTCCGAAATTCCAATGTACAGGTGTGATGAATGTGATTACGAAAGTAGACGTAAGGGTGAGCTGAAACGTCATCAGTTAATACACAAAGACCCTTCCGAGATCCAGATGTACAAGTGTGATCTGTGTGATTATGAAGTTAAACGTAAGAGTGATTTGAAATATCATCAGCTAAAACACAAAGATCCTTCTGAGGttcaaatgtacaagtgtgatactTGTAcgtttgaaacaaaatataagaaTTGCCTAAAAGATCATCAATTAACACATATAAAGACCCTTTTGAACTCTAAACGTACAGATGTATTTAACGTGATTGAAGATAAACAAACGGAAGAGTTGAAACatcaaataaaacacaaatatctttctaatatcCGATTATACAAGTGTGATGTGTGTGATTACGAAGTTAAACGTAAGAGTGATCTAATGAAACATCAGCTAatacacaaagacccttctgaagTTCAGATTTATAAGTGTAGTGTATGTGAATATAAAGCAAAACGAAAGAGTCATCTTAACACGCATCTGTTGAGGCACAAAGATCCTTCAGAAAtcaaaatgtacaaatgtgatatttGTACTTATGAAACGAGATATAAAAGTCACCTGCAAAATCATCATTTAACACATAAAGACCCATCTGAAGTCCATACATACAAGTGTGAAGTATGTGACCATAAAACTACACGTAAGTGTTATCTAAAAAATCATCAGTTAACACACAAAGAtccttctgaaatccaaatgtacaaatgtgatactTGTATGTTTGAAACTAGATACAAGAGTAGCCTGAAAGATCACCAATTAACacacacaaagacccttctgaagTCCAAATGTACAGATGTGTGCATGTGA
- Protein Sequence
- MEPENFNKEAFCRLCLNIISNTNSEEIETVSREILKVILPDLILEEEQKHQMCKACCSKLFTAFNFKSTCMGTEDVISSYISSTQMSLIDLKDVYLILNGNIQLTDTWENQRICRLCIQCVINGFVSLNEVDNDIIDGIIPQVNINATKDPVICGSCFDSLRIHNGFVKNCREAQGKYQNVDILPYIKTEEIEVKLEDGHDAQEKYRNSDKQPYIRSEQMKIKSEDHDNLDEEIMENERKHISESVGETKCEYMLDSLHTSEGFVKNDLEAQERYQNVDKPPYIKTEQIEIKLENGYDMLETYKNIDEQAHIKSEEMEIQSEGEDQDIDSSSQTLEEETIEERKVQISEDIGETKDECMLISLTEAQINKWETPLDISSCDPIEIGIYKCSVCDYKTKRKNNLNRHKLKHKDPSEIQMYKCDICTFQTKYMESVKSHLLLHKDPSKIQMYKCDTCTFETRYKNHLKDHQLIHKDPSEIAHKELFKCDTCDFATRHKSGLEYHELKHKDPSEIPMYRCDECDYESRRKGELKRHQLIHKDPSEIQMYKCDLCDYEVKRKSDLKYHQLKHKDPSEVQMYKCDTCTFETKYKNCLKDHQLTHIKTLLNSKRTDVFNVIEDKQTEELKHQIKHKYLSNIRLYKCDVCDYEVKRKSDLMKHQLIHKDPSEVQIYKCSVCEYKAKRKSHLNTHLLRHKDPSEIKMYKCDICTYETRYKSHLQNHHLTHKDPSEVHTYKCEVCDHKTTRKCYLKNHQLTHKDPSEIQMYKCDTCMFETRYKSSLKDHQLTHTKTLLKSKCTDVCM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -