Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:38855785-38863437[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00034 0.025 16.5 1.5 1 23 287 309 287 309 0.97

2 13 0.00037 0.027 16.4 0.4 1 23 318 340 318 340 0.98

3 13 0.00072 0.052 15.5 4.0 1 23 349 371 349 371 0.99

4 13 0.009 0.65 12.0 2.3 1 23 380 402 380 402 0.97

5 13 0.0033 0.24 13.4 3.4 1 23 411 433 411 433 0.99

6 13 0.0029 0.21 13.6 6.8 1 23 469 491 469 491 0.99

7 13 0.00043 0.031 16.2 1.3 1 23 500 522 500 522 0.99

8 13 0.035 2.5 10.2 0.3 1 23 531 553 531 553 0.96

9 13 0.00068 0.049 15.6 1.5 1 23 562 584 562 584 0.98

10 13 0.053 3.9 9.6 1.7 1 23 593 615 593 615 0.98

11 13 0.0012 0.087 14.8 2.9 1 23 624 646 624 646 0.99

12 13 0.0069 0.5 12.4 1.7 1 23 655 677 655 677 0.98

13 13 0.0019 0.14 14.1 2.5 1 23 686 708 686 708 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00034	0.025	16.5	1.5	1	23	287	309	287	309	0.97
2	13	0.00037	0.027	16.4	0.4	1	23	318	340	318	340	0.98
3	13	0.00072	0.052	15.5	4.0	1	23	349	371	349	371	0.99
4	13	0.009	0.65	12.0	2.3	1	23	380	402	380	402	0.97
5	13	0.0033	0.24	13.4	3.4	1	23	411	433	411	433	0.99
6	13	0.0029	0.21	13.6	6.8	1	23	469	491	469	491	0.99
7	13	0.00043	0.031	16.2	1.3	1	23	500	522	500	522	0.99
8	13	0.035	2.5	10.2	0.3	1	23	531	553	531	553	0.96
9	13	0.00068	0.049	15.6	1.5	1	23	562	584	562	584	0.98
10	13	0.053	3.9	9.6	1.7	1	23	593	615	593	615	0.98
11	13	0.0012	0.087	14.8	2.9	1	23	624	646	624	646	0.99
12	13	0.0069	0.5	12.4	1.7	1	23	655	677	655	677	0.98
13	13	0.0019	0.14	14.1	2.5	1	23	686	708	686	708	0.99

Sequence Information

Coding Sequence: ATGCAGCAAGAGAACTTTAATAACTTATTATGTAGACTGTGTTTTAATGTCATAAGCTATACAAATTCCAAAGTAATAGATGAAGTTACGAGGGAGGTTTTGGAAGTTGTTTTGCCTAATCTAgACTTAGAAGAAAGACATAATCACATTTGTGAAACATGTTGCTCAAAATTATTTGCCGCTTTTAATTTCAAGTCGACGTGTATCGGTACTGAAGATTTTATCTCTTCGTACATTACTTCCAGTGAAGTGTCATGTGTTGACTTAAAAGAAGTTTATTTAATGGTGAATAGTGATATTCAGTTAACCGATATATTGGTAAATCAGAGAATTTGTCGATTGTGTCTCCAGCTGATAACGCACGGGTTTGTGCCACTAAATGAAGTGGGTAATGAAGTAATTAATACATACCTACCTCAATTAAACATCGGTGCTACCAAGGACCCCGTAATATGCGGATCATGTTTTGATTTGCTTAATACCCATGGTGGGTTTGCAAAAAACTGCATTGACGCGCAGGGAAAATATAAAGATGTCAATAAACTGCCTTATATTAAAACTGAAGAGTTTGAATTCAAACAGGAGGGTTGTTATGGCATGCAAGATATATGTAGAGAGATTGATAAACCTTGCATTAAATCCGAAGAGATTGAATTGAAACAGGAATATGACATACGTACTGCAATTGATAAGTCTTATATTAAATGCGAAGAGATTGAGATAAAGCCAGAAGAAGGAGATGATTCCTCTTCACCCAATTTTGATGGTCAAGCAACTGTAAGTAGAAGAGGAAAACTCGAAGGTGAtgtaaaacacaaaattgttcaaaatctgaaacattctttaaaaattaaattgcacaAGTGTAATATATGTGATTATGAAACTAAACGCAAGGGTGATCTGACAATTCATGAGCTTAGGCACAAAGACCCTTCTAAAATCAAAATGTACAAGTGCGATGCATGTGATTATGAAACGAAACGTAAGGGTAATCTGAACATTCATCAGTTATTACACAAAGACCCTTCCGAaattcaaatgtacaaatgtaacactTGTACTTATGAGACTAAATACAAGAGTTATCTGAAAACTCATCAAATAACACACAAAGACTCTTCTGAAGTCCAAATGTACGAATGTGATATTTGTACatataaatctaaatataaGAATGGTCTAAAACATCATCAAGTAGTGCACAAAGACCAGGCTGAAATTTGtatgtacaagtgtgatactTGTACTTATGAAACCAAATATAAGCGTCaactgaaaattcatcagttaaAACACAAAGAGCCTTCTGAAAACCAGATGAAACTCATGTACggatgtgattataaaactGAACACAAGGATTGTCAGTTATTAAACAAACGCGTTTCTGAAATCCAAACGTACAAATGTGATACTTGTACTTTTGAAACAAGATATAAGAGTCACCTTAAAAATCATAAGAGAACACACAAAGACTTTTCCAAAAGTCAAATGTACAGATGCAGTGAATGTGCTTATGAAACAAAACGTAGGGATCAGCTGAAACTTCACcaattaacacacaaagacccttctgaaatccaaatgtatgCGTGTGATGCATGTGAATTTAAAGCGACACGAAAGGGTTACCTTAAAAATCACCAGTTAATCCACAAAGATCCTtcagaaatccaaatgtacaagtgtgatgaATGCGGTTATGAAAACAAACGTAAACGCGAACTGAAGAGACATCAGTTACtgcacaaagacccttctgaaaatcaaatgtacaagtgtgatgcCTGTAGTTATGTAACAATATATCAGCACTACTTGATAAATCACCGAGTAACACACAAAGACCGTTCTGGtatccaaatgtacaagtgtgatacaTGTGGTTATGCAACAAATCATAAGGGTAGGTTGAGAAGTCATCAGTTAAAGCACAAAGACCTTTCTGAAATCCAAACGTACAAATGTGATATTTGTACTTTTCAATCTAAATATAAGGAATCTCTGAAAAGTCATCTGCTATTGCACAAAAACCCTTCTGAAATCGAAGTATACAAATGTGTTACTTGTActtttgaaactaaatataagggaaacctgaaaaatcATCAGCTGACACACAAAGAAACAACATAA
Protein Sequence: MQQENFNNLLCRLCFNVISYTNSKVIDEVTREVLEVVLPNLDLEERHNHICETCCSKLFAAFNFKSTCIGTEDFISSYITSSEVSCVDLKEVYLMVNSDIQLTDILVNQRICRLCLQLITHGFVPLNEVGNEVINTYLPQLNIGATKDPVICGSCFDLLNTHGGFAKNCIDAQGKYKDVNKLPYIKTEEFEFKQEGCYGMQDICREIDKPCIKSEEIELKQEYDIRTAIDKSYIKCEEIEIKPEEGDDSSSPNFDGQATVSRRGKLEGDVKHKIVQNLKHSLKIKLHKCNICDYETKRKGDLTIHELRHKDPSKIKMYKCDACDYETKRKGNLNIHQLLHKDPSEIQMYKCNTCTYETKYKSYLKTHQITHKDSSEVQMYECDICTYKSKYKNGLKHHQVVHKDQAEICMYKCDTCTYETKYKRQLKIHQLKHKEPSENQMKLMYGCDYKTEHKDCQLLNKRVSEIQTYKCDTCTFETRYKSHLKNHKRTHKDFSKSQMYRCSECAYETKRRDQLKLHQLTHKDPSEIQMYACDACEFKATRKGYLKNHQLIHKDPSEIQMYKCDECGYENKRKRELKRHQLLHKDPSENQMYKCDACSYVTIYQHYLINHRVTHKDRSGIQMYKCDTCGYATNHKGRLRSHQLKHKDLSEIQTYKCDICTFQSKYKESLKSHLLLHKNPSEIEVYKCVTCTFETKYKGNLKNHQLTHKETT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -