Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:43516919-43525910[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 0.28 21 7.3 3.2 1 23 132 154 132 154 0.99

2 24 0.076 5.5 9.1 6.8 1 23 163 185 163 185 0.98

3 24 0.12 8.4 8.5 3.8 1 23 190 212 190 212 0.98

4 24 0.052 3.8 9.6 7.5 1 23 221 243 221 243 0.98

5 24 0.37 27 6.9 6.4 1 23 252 274 252 274 0.99

6 24 0.0047 0.34 12.9 2.4 1 23 283 306 283 306 0.97

7 24 1.3 91 5.3 5.8 1 23 315 337 315 337 0.98

8 24 0.091 6.6 8.9 0.6 1 23 346 369 346 369 0.96

9 24 0.0068 0.49 12.4 3.2 1 23 378 400 378 400 0.99

10 24 0.00036 0.026 16.4 1.3 1 23 409 432 409 432 0.97

11 24 0.053 3.8 9.6 5.3 1 23 441 464 441 464 0.96

12 24 0.0059 0.43 12.6 2.5 1 23 473 495 473 495 0.99

13 24 0.01 0.74 11.8 3.0 1 23 504 527 504 527 0.97

14 24 0.0055 0.4 12.7 5.1 1 23 591 613 591 613 0.98

15 24 0.0042 0.3 13.1 3.4 1 23 622 645 622 645 0.96

16 24 0.03 2.2 10.4 1.6 1 23 654 676 654 676 0.98

17 24 0.026 1.9 10.6 3.2 1 23 685 708 685 708 0.97

18 24 0.0057 0.41 12.7 3.5 1 23 717 740 717 740 0.97

19 24 1.3 93 5.2 5.9 1 23 749 771 749 771 0.98

20 24 0.0019 0.14 14.1 2.5 1 23 780 802 780 802 0.98

21 24 0.00027 0.02 16.8 1.7 1 23 811 834 811 834 0.98

22 24 0.031 2.2 10.3 4.2 1 23 843 866 843 866 0.97

23 24 1.2 89 5.3 6.3 1 23 874 896 874 896 0.96

24 24 0.081 5.8 9.0 0.7 1 23 904 926 904 926 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	0.28	21	7.3	3.2	1	23	132	154	132	154	0.99
2	24	0.076	5.5	9.1	6.8	1	23	163	185	163	185	0.98
3	24	0.12	8.4	8.5	3.8	1	23	190	212	190	212	0.98
4	24	0.052	3.8	9.6	7.5	1	23	221	243	221	243	0.98
5	24	0.37	27	6.9	6.4	1	23	252	274	252	274	0.99
6	24	0.0047	0.34	12.9	2.4	1	23	283	306	283	306	0.97
7	24	1.3	91	5.3	5.8	1	23	315	337	315	337	0.98
8	24	0.091	6.6	8.9	0.6	1	23	346	369	346	369	0.96
9	24	0.0068	0.49	12.4	3.2	1	23	378	400	378	400	0.99
10	24	0.00036	0.026	16.4	1.3	1	23	409	432	409	432	0.97
11	24	0.053	3.8	9.6	5.3	1	23	441	464	441	464	0.96
12	24	0.0059	0.43	12.6	2.5	1	23	473	495	473	495	0.99
13	24	0.01	0.74	11.8	3.0	1	23	504	527	504	527	0.97
14	24	0.0055	0.4	12.7	5.1	1	23	591	613	591	613	0.98
15	24	0.0042	0.3	13.1	3.4	1	23	622	645	622	645	0.96
16	24	0.03	2.2	10.4	1.6	1	23	654	676	654	676	0.98
17	24	0.026	1.9	10.6	3.2	1	23	685	708	685	708	0.97
18	24	0.0057	0.41	12.7	3.5	1	23	717	740	717	740	0.97
19	24	1.3	93	5.2	5.9	1	23	749	771	749	771	0.98
20	24	0.0019	0.14	14.1	2.5	1	23	780	802	780	802	0.98
21	24	0.00027	0.02	16.8	1.7	1	23	811	834	811	834	0.98
22	24	0.031	2.2	10.3	4.2	1	23	843	866	843	866	0.97
23	24	1.2	89	5.3	6.3	1	23	874	896	874	896	0.96
24	24	0.081	5.8	9.0	0.7	1	23	904	926	904	926	0.98

Sequence Information

Coding Sequence: ATGGAAAGTCTATCGAATATCAAATGTGAAGATGTTGAAATCAAATCTGAAGAGATTTATAGGGATATCCGCTTACAGAATTTAAAAGATGAACCTGTCGACTGCACCGGCACAAGTTTATTAACGAACTGTTTGAGTATGAAGGAGGAAATTAAGGATATTTGTGAGGACAACGCCATAGAAAGTTCGTCCAGTATTAAATTTGAAGATGTTGAAATCAAATCGGAAGGGGATTATAGTGGCATCCCCTTGAAAGATGAACCCACAAGTGAATGCAAATACAAACGTGTAAAAACAACAAATGATTCTATGCTTAAGGGCAAAAGAAAACGACACGGGTCGAAGGACAAATACCGCGGATTGAAATGCAAGAACTCTTCCAGAGAACAGACATATAAATGTGATTTCTGTACATATGGGAGTGATCAAATCAAATGTCTTGCACGACATCAACAGAGACACAAAGACATATCGGAAAAACAGATGTATTACTGTCATTCATGCGAATATAAGTCTTATCATAAAGGAAACCTCACACAACATCAGCTTAAACACAAAAAACGGATGTATAAGTGTGATTCGTGTGATTTTAAAACCTATTATAAAAACTACCTCTCCCAACATCAGTTAAGGCATAAGGACATCCCTGAAGATCAGATGTATAGATGTGATTCATGcgattataaaacttatcgaaAGCAAAATCTTAACCACCATCATCTAAGACACAAGAACATACCTGAAAAACAGATGTATAAGTGTGATtcatgtgattataaaaccatgTATAAGAGCTGTTTTACACAACATCAATTAAAACACAAAGACATTGTTAAAGTGCAGATGTATCAATGCGATTCGTGcgattataaaactatttataagaCCAACCTTACACAACATCTGTCAAAGAAACATAAAGATATCCCTGAAGAAGATATGTATAAGTGTgagttatgtaattttaaaactatttataagAAGTGTGTTAAACAGCATCAGTTAAAACACAAAGATGGTCTGAAAGCGCGGATGTATGAATGTGATTTATGtgattttaaaacgaaatataaggCCAGCCTCACACCACATCAATTAGTAAAACATAAAATTGTCCCCAAAGATGatatgtataaatgtgattcgtgtgagtttaaaactatttataagAGCTATCTTACACGACACCAGTTGAAACACAAAGACGTTATCAAGGCCCAGATATATATCTGCGATTTGTGCGATTTTACAACGAAATATAAGAGCAACCTTATACAACACCAGTCCATGAAACACGAAAATATCCCTGAAGAAGATATGCATAAATGTGATTCTTgcgattataaaacaaaatataaggcCACCCTAACAAAACACCAATTTATGAAACATACAGATATCCCCGAAGAAGATATGTATAAATGTGGTTCCTGTGATTTTAAAACTGCCTATAGCTACTATCTTACGCGGCACCAGTTAAAACACGAAGACATTCTCAAAGCCCGGATGTATGAATGTGATTCGTGtgattttaaaacgaaatataagaAGAACCTTATACAACACCAGTCCAAGAAGCACATAAATATCCCCGAAGAGGATAGtgaCACTTCCTCAGAGAACTTGAAAAATGAACCTGTCGACTGCACAGACAAATGCCAAACTGAATATGTAAAACAAAGGAATGCTTCTACTCTCAAGCGCAAAAGGAAGCGATACTATTCAAAAGACAAATACAGTGGGTTAAATCACATAGTCTTTGAAAAGATGTATAAATGCAGCTCTTGTGACTATGCAACTGATCGAAAGAGATATCTTACTAGACATCAGCATAGGCACAAGAACGTCTCTGAAGAAcagatgtataaatgtgatttgtgtgattataaaaccatttataagaGCTACCTTACACAACACCAGTTCAGGAAACATAAAGATATCCCCGAACAAGatatgtataaatgtgattcgtGTGATTTTAAAGCAATCTATAAGTACTACCTTACACAACATCAGATATCACACAAAAACATCTCGGAGGAACAGATGTATAAGTGTTATTCATGcgattataaaaccatttataagaGCTATTTGATACAACATCAGTCCAGGAAACATAAAGGTACCCCCAGAGTAGATATATATAAATGTGATTCATGTGATTTCAAAACGAAATATAAGAACAGCCTTACGCGACACCAGTCCAGGGAACATAAAGATATCCCCGATGAAGATATGTATAAATGCGATTCatgtgattttaaaacaaaGTATAAGAGCAATCATACACAGCATCAGTTATCACACAAGAACATCTCAGAAGAGCAGTTGTATAATTGTGAttcgtgtgattataaaaccatcTATAAGAGCTACCTTACACGACACCAGTTAAAACACAAAGATGTTCCCAAAGAGCGGATGTATGAATGTGATTTGTGCGattataaagcaaaatataaGAGCAATCTTACGCAACACCAGTCCACGAAACATAAAGATATCCCGGAAGATGATATGTATAAATGCGATTCGTGTGACTTTAAAACGAAGTATAAGACCAATTTCACACAACACCAGTCCATAAAACACGATATCTCGgatgaaaatttttataaatgtgatTCGTGTGATTTTAAAACTCTCTATAAGCACTATCTTACACGACATCAGCAGAAACATAACATCGGTGAAGATCAAATGTATAAGTGTGAATCATGCAATTATAAAGCTGTTTATAAGACCTGGGTTACACGACATCAGTTGATACACAAACACCTACCCAAAGCGCAGATGCATGAAAGTGATTCATGTGATTCTAAAACGGCATATAAGACCAACCTTGCACAAAACTAG
Protein Sequence: MESLSNIKCEDVEIKSEEIYRDIRLQNLKDEPVDCTGTSLLTNCLSMKEEIKDICEDNAIESSSSIKFEDVEIKSEGDYSGIPLKDEPTSECKYKRVKTTNDSMLKGKRKRHGSKDKYRGLKCKNSSREQTYKCDFCTYGSDQIKCLARHQQRHKDISEKQMYYCHSCEYKSYHKGNLTQHQLKHKKRMYKCDSCDFKTYYKNYLSQHQLRHKDIPEDQMYRCDSCDYKTYRKQNLNHHHLRHKNIPEKQMYKCDSCDYKTMYKSCFTQHQLKHKDIVKVQMYQCDSCDYKTIYKTNLTQHLSKKHKDIPEEDMYKCELCNFKTIYKKCVKQHQLKHKDGLKARMYECDLCDFKTKYKASLTPHQLVKHKIVPKDDMYKCDSCEFKTIYKSYLTRHQLKHKDVIKAQIYICDLCDFTTKYKSNLIQHQSMKHENIPEEDMHKCDSCDYKTKYKATLTKHQFMKHTDIPEEDMYKCGSCDFKTAYSYYLTRHQLKHEDILKARMYECDSCDFKTKYKKNLIQHQSKKHINIPEEDSDTSSENLKNEPVDCTDKCQTEYVKQRNASTLKRKRKRYYSKDKYSGLNHIVFEKMYKCSSCDYATDRKRYLTRHQHRHKNVSEEQMYKCDLCDYKTIYKSYLTQHQFRKHKDIPEQDMYKCDSCDFKAIYKYYLTQHQISHKNISEEQMYKCYSCDYKTIYKSYLIQHQSRKHKGTPRVDIYKCDSCDFKTKYKNSLTRHQSREHKDIPDEDMYKCDSCDFKTKYKSNHTQHQLSHKNISEEQLYNCDSCDYKTIYKSYLTRHQLKHKDVPKERMYECDLCDYKAKYKSNLTQHQSTKHKDIPEDDMYKCDSCDFKTKYKTNFTQHQSIKHDISDENFYKCDSCDFKTLYKHYLTRHQQKHNIGEDQMYKCESCNYKAVYKTWVTRHQLIHKHLPKAQMHESDSCDSKTAYKTNLAQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -