Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073435.1:13668499-13675334[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00065 0.047 15.6 2.8 1 23 279 301 279 301 0.98

2 12 9.2e-05 0.0066 18.3 1.7 1 23 310 332 310 332 0.99

3 12 0.0024 0.17 13.8 1.8 1 23 341 363 341 363 0.98

4 12 0.0018 0.13 14.2 0.7 1 23 372 394 372 394 0.97

5 12 0.00042 0.031 16.2 2.6 1 23 403 425 403 425 0.98

6 12 0.03 2.1 10.4 2.8 1 23 435 457 435 457 0.97

7 12 0.00033 0.024 16.6 5.4 1 23 465 487 465 487 0.98

8 12 0.055 4 9.6 1.9 1 23 496 519 496 519 0.94

9 12 0.04 2.9 10.0 0.9 1 23 519 541 519 541 0.98

10 12 0.00054 0.039 15.9 2.1 1 23 548 570 548 570 0.98

11 12 0.013 0.97 11.5 0.7 1 23 581 603 581 603 0.98

12 12 0.00055 0.04 15.8 4.5 1 23 612 634 612 634 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00065	0.047	15.6	2.8	1	23	279	301	279	301	0.98
2	12	9.2e-05	0.0066	18.3	1.7	1	23	310	332	310	332	0.99
3	12	0.0024	0.17	13.8	1.8	1	23	341	363	341	363	0.98
4	12	0.0018	0.13	14.2	0.7	1	23	372	394	372	394	0.97
5	12	0.00042	0.031	16.2	2.6	1	23	403	425	403	425	0.98
6	12	0.03	2.1	10.4	2.8	1	23	435	457	435	457	0.97
7	12	0.00033	0.024	16.6	5.4	1	23	465	487	465	487	0.98
8	12	0.055	4	9.6	1.9	1	23	496	519	496	519	0.94
9	12	0.04	2.9	10.0	0.9	1	23	519	541	519	541	0.98
10	12	0.00054	0.039	15.9	2.1	1	23	548	570	548	570	0.98
11	12	0.013	0.97	11.5	0.7	1	23	581	603	581	603	0.98
12	12	0.00055	0.04	15.8	4.5	1	23	612	634	612	634	0.98

Sequence Information

Coding Sequence: ATGGAAGAGAAAAAAGTACACATATGTAGGTTATGTTTAAATGTAGTATCAGATAACAATTACGAAGCTCTAAAAGAAACTCACAATAtacaaattcaatatattttaccAGATTTGAATTTGTCGGTGAGTAACAACCCCATTCTTTGCATTCCATGTATAGATGCCTTGCAAGAATCATACGAATTCAAAACATCATGTGTTGAAGTAGAGACCTACTTAGAAGATTTTATTACgccattaaaaaaagtaaacctGAGGGAAGTCGTTGCCAATAGAATATTCCCCGGAGAAGTCGTAAATGAAATAACGGAAATTAACGAAGGCAAAATGATATGCAGACTTTGCTTAGGATTTATAGAGGATAAGTTATTTAAGGAATTTGGTGTAATAGAAGAGAATATACTCCAGAAGTGTGTTCCCGAAATGGATTTAACTGTTACCGAAAACCCAGTCTCGTGCGAAAACTGCATGGGATATCTCCACAGTCAATTCAACTTCATAATGAGGTGTTTAGACGTAGACGAAACAATAAATGGGTATATAACGTCGCAAGGTTTGACTAGTGACGATAAATTGAATCTCCATGAAGTAATGCAATTTTCAATTCGAAATAATCAGGTGAACGAAAGTACCGATTGTGAAAATAGTTTGATGGAATtagaagataaaaattttattcccTTTAATGACAGTTTTGGTATGGATGAAGGTGATATCGCCAATATGGCACTAGATCCGCTACTTGATGGTATAAGGAATTTGAACGAAGGTGGACTCGATATTAGGTGTACAAAACCTTCcTTTGATGCAAGAGGCCGCCCCATCATTTGGCACAAATGCGAAGTTTGCTCTTACTCAACGTTTCGGAAGTATTCCCTTCGCATCCATATGCTCATCCACAAAAAACCAGAAGAATACACCATGTACAAATGCACAATCTGTCCTCACGAGACCAACAGAAAGAGCAACCTCCTCATCCACCTACTCAAGCATAAGGGTCCCGGAGAGGTGACCATGCACCAGTGCAATGTCTGCACCTATGAAACCAGACTGAGAAGTAATCTCTTGAAGCACCTTCTGGTCCACAAGAGGCCGGATGAAGTGGAGATGCACCAATGCCCAAATTGTCCCTACAAGAGCAAGCTGAAAGGCAACCTCCTCATCCACATGATCCAGCACAAGAAGCCGGAAGAATTGATCATGCACAAATGCAGCGAGTGTCCGTACGAGACCAAGTTGAAGAACAACCTCAGGAAGCACATTCTCACCCATCGGGGTCCCATCGAAAATGCCCCCGTGTATCAATGCAAAGAGTGTACCTATCAGTCAAGGTGGAAGTCGCACTTGCTGAGGCATATGGTACTTCACAACTCGGTAGAGGTGACCTTACATAAGTGTGAGCACTGCCCTTACGTAGCTAATCACAAGGATAACCTTAGAAAGCATCTGCTTACGCATAAGGATCCTAGCGAGGTTAAGATGCATAAGTGTGATCTGTGTGATTTTCAGAGCAAGAGGAAGGATAAGATTAAGCAGCATATGTTCAATATGCACAAATGCACGGCTTGCGAATTTGAAACCAAAGAGAAAGAGGAGCTGATCAGTCACTTGAAGACtcacgtattgcctgagcagAGTTTCAAGTGTGATATTTGTAATTATGAGGCAAGGCAGAAACGGTATCTCCAAAGGCACAAAAAGATCCACCTGGTGGAGAATCCAGACCAAATAGTCTGGCACAAATGTGAATTGTGTCCCTACCAAGCCAAACGGAAGGACGTTCTCAACAACCACCTTTTAATCCACAAGGATCCTAGTCAGGTCGAAATGCACCAGTGCCCAACTTGCCCCTACCAAACCAAAAGAAAGCACAACCTCGTTATACACCAGAAGAGCCATTGTAAAGGAGATTTTGGAAAGAAACGGTGCAATGAGGAAATGGGGAATTAA
Protein Sequence: MEEKKVHICRLCLNVVSDNNYEALKETHNIQIQYILPDLNLSVSNNPILCIPCIDALQESYEFKTSCVEVETYLEDFITPLKKVNLREVVANRIFPGEVVNEITEINEGKMICRLCLGFIEDKLFKEFGVIEENILQKCVPEMDLTVTENPVSCENCMGYLHSQFNFIMRCLDVDETINGYITSQGLTSDDKLNLHEVMQFSIRNNQVNESTDCENSLMELEDKNFIPFNDSFGMDEGDIANMALDPLLDGIRNLNEGGLDIRCTKPSFDARGRPIIWHKCEVCSYSTFRKYSLRIHMLIHKKPEEYTMYKCTICPHETNRKSNLLIHLLKHKGPGEVTMHQCNVCTYETRLRSNLLKHLLVHKRPDEVEMHQCPNCPYKSKLKGNLLIHMIQHKKPEELIMHKCSECPYETKLKNNLRKHILTHRGPIENAPVYQCKECTYQSRWKSHLLRHMVLHNSVEVTLHKCEHCPYVANHKDNLRKHLLTHKDPSEVKMHKCDLCDFQSKRKDKIKQHMFNMHKCTACEFETKEKEELISHLKTHVLPEQSFKCDICNYEARQKRYLQRHKKIHLVENPDQIVWHKCELCPYQAKRKDVLNNHLLIHKDPSQVEMHQCPTCPYQTKRKHNLVIHQKSHCKGDFGKKRCNEEMGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227649;
90% Identity: -
80% Identity: -