Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:38759492-38762874[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0086 0.62 12.1 2.1 1 23 304 326 304 326 0.98

2 14 0.024 1.8 10.7 1.1 1 23 332 354 332 354 0.97

3 14 0.12 8.7 8.5 0.9 1 23 363 385 363 385 0.97

4 14 0.0053 0.38 12.8 2.5 1 21 394 414 394 415 0.95

5 14 0.0043 0.31 13.0 2.2 1 23 425 447 425 447 0.98

6 14 3.9 2.8e+02 3.7 0.9 10 23 465 478 459 478 0.82

7 14 0.00019 0.014 17.3 3.5 1 23 484 506 484 506 0.98

8 14 3.9e-06 0.00028 22.6 1.9 1 23 515 537 515 537 0.99

9 14 8.9e-06 0.00065 21.5 1.5 1 23 546 568 546 568 0.99

10 14 0.00019 0.014 17.3 2.9 1 23 577 599 577 599 0.99

11 14 0.015 1.1 11.3 0.4 1 23 608 630 608 630 0.98

12 14 0.12 8.9 8.5 3.9 1 23 639 661 639 661 0.99

13 14 0.0057 0.41 12.7 1.2 1 23 670 692 670 692 0.97

14 14 0.037 2.7 10.1 6.6 1 23 701 723 701 723 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0086	0.62	12.1	2.1	1	23	304	326	304	326	0.98
2	14	0.024	1.8	10.7	1.1	1	23	332	354	332	354	0.97
3	14	0.12	8.7	8.5	0.9	1	23	363	385	363	385	0.97
4	14	0.0053	0.38	12.8	2.5	1	21	394	414	394	415	0.95
5	14	0.0043	0.31	13.0	2.2	1	23	425	447	425	447	0.98
6	14	3.9	2.8e+02	3.7	0.9	10	23	465	478	459	478	0.82
7	14	0.00019	0.014	17.3	3.5	1	23	484	506	484	506	0.98
8	14	3.9e-06	0.00028	22.6	1.9	1	23	515	537	515	537	0.99
9	14	8.9e-06	0.00065	21.5	1.5	1	23	546	568	546	568	0.99
10	14	0.00019	0.014	17.3	2.9	1	23	577	599	577	599	0.99
11	14	0.015	1.1	11.3	0.4	1	23	608	630	608	630	0.98
12	14	0.12	8.9	8.5	3.9	1	23	639	661	639	661	0.99
13	14	0.0057	0.41	12.7	1.2	1	23	670	692	670	692	0.97
14	14	0.037	2.7	10.1	6.6	1	23	701	723	701	723	0.99

Sequence Information

Coding Sequence: ATGCAACTAGAAAACTTGAATAAAGAAGTATTTTGCAGCTTGTGTCTCAATGTCATAAGCTATCCAAATCCTGAAGCTATAGAAACAGTCGCGAGAGAGATTTTAAAAGTTGTTTTGCCGAATTTGGTTTTGGAAGAGGAGCATAAACACCTGATGTGTAAAGCATGTTATTCGAAATTATTTGCCGCTTTCAATTTTAAGTCAACATGTATGGGTACTGAGGATATTATTTCTTCATACGTTAATTTCAGTAAAGTGTCCCTGGTCGAGCTAAAAGAAGTTTACTTAAAGGTGAATACAAACATGCAGTTTACCGATATATGCgaaaatcagaaaatttgtcGATTGTGTATTCAAATCATAACATTTGGATTTGTGTCACTAAATGAAGTGGATAATGACATAATTAATGCATACATACCTCAAGTTAACATCAATGCCACCAAGGACCCTGTTATATGTGGACCATGCCTTAATTTGCTTCGTACCCTTGGCGGTTTTGTAAAGGATTGCTCGGAAGCAcaggaaaaatacaaaaatgttgaCAAACAGTCTTGTATAAAAAAGGAAGAGATTGAAATTAAAGTGGAAAATGGTCGTGATGTGCAGGAGGCATCTGAAAACATTGATTATATTAAATCCgaagaaattgaaataaagtCAGAGGACGGAGATCAAGATAATGATTGCTATTCGAACCATTTGGATGAGAAAATCATTAGAAATAGAAAGATGCAAATTTCTGAAGATATAGATGAAACAAAGTGTGCACTGCTTACGTGTGAGACCTCATATAAAGCTCATATAGACAGAAGGGAAACTCCATTAGATATATCATCATATAAGGATAAGATAAGGATAAGGTTGGATCAGTTTCCAAAACTAAAGCACTCTTCCAAAACCCAATTGTACAGGTGTGACACTTGTTATTATGAAACTCCATATAAAGGTCATCTGAGACGTCATTGGTCAGTACACAAAGAAACTCCGATATACAAGTGTATTTTATGTGGCTATAAAGCTAAACGAAAAAGTTATCTTGACATGCATCAGTTAACACACAAAGATCCTTCGGAAAttgaaatgtacaaatgtgatatttGTCCTTTTCAATCTAAATATAAGACATCTGTGAGAGGTCATCAGTTATtgcacaaagacccttctgacatccaaatgtacaaatgtgatactTGTACatttgaaactaaatataagagTCACCTTAAAAATCATCAGTTAATATACAAAGGCTCTTCTGAAGCCCAGATGTACAGATGTGATACCTGTGATTATGGAACTAAACATAAGGATGCTATGAAAAGCCACCAGTTATTGCACAAGGAATCTTCTGGGGCCCAAGTATACAACAGTAATAGATGTACTCCTgaaattagatataaaaaacatttgataAAGCATCAATTATCACACAAAGAAATTCAAATGTACATGTGTGATACATGTGATTTTGCTACTAAACATAAGAGTAGCCTAAAAAATCATCAGTTAACACATAAGGACCCTTCCAAAATCCGAATGTACAAATGCGATGAATGTGATTACCAAAGTAAACGTCAGAGTGAGCTGAGACGTCATCAGTTAACACACAAGGACTCTTCTGAAGTCCAGATGTACAAGTGCGATACATGTGATTATGAAGTTAAACGTAAGAGTGATCTGAGAAACCATCAATTAACACACAAGGACCCTTccgaaatccaaatgtacagatGTGATGAGTGTGACTACGAAAGTAAACGTAGCAGTGAGATGAAACATCATCAATTAACACACAAAGCCCCTTCCGAAGTTCAGATGTACAGATGTGATGTGTGTGATTATGAAGCTAAATACAAGACAGCTGTGAAAAGCCATCAGTTAATGCACAAAGACCCTTCCGAAgttcaaatgtacaaatgtgacaCTTGCATTTATGGAACTAGATATAAGAATCATTTGAAAACTCATCTGTTAACACACACACACCCTTCTGAAATCCatatgtacaaatgtgatgTGTGTGCTTATGGAACTAAACGCAAGGGTGATCTAAGAAATCATAAATTTTCGCACCAAAATCCTTCccaaatccaaatgtacaagtgtgacacttgcaattttcaaacaaaatataagaGAAGCCTGAAAAATCATCACttaacacacaaagacccttctcaAATCCAAATGTAG
Protein Sequence: MQLENLNKEVFCSLCLNVISYPNPEAIETVAREILKVVLPNLVLEEEHKHLMCKACYSKLFAAFNFKSTCMGTEDIISSYVNFSKVSLVELKEVYLKVNTNMQFTDICENQKICRLCIQIITFGFVSLNEVDNDIINAYIPQVNINATKDPVICGPCLNLLRTLGGFVKDCSEAQEKYKNVDKQSCIKKEEIEIKVENGRDVQEASENIDYIKSEEIEIKSEDGDQDNDCYSNHLDEKIIRNRKMQISEDIDETKCALLTCETSYKAHIDRRETPLDISSYKDKIRIRLDQFPKLKHSSKTQLYRCDTCYYETPYKGHLRRHWSVHKETPIYKCILCGYKAKRKSYLDMHQLTHKDPSEIEMYKCDICPFQSKYKTSVRGHQLLHKDPSDIQMYKCDTCTFETKYKSHLKNHQLIYKGSSEAQMYRCDTCDYGTKHKDAMKSHQLLHKESSGAQVYNSNRCTPEIRYKKHLIKHQLSHKEIQMYMCDTCDFATKHKSSLKNHQLTHKDPSKIRMYKCDECDYQSKRQSELRRHQLTHKDSSEVQMYKCDTCDYEVKRKSDLRNHQLTHKDPSEIQMYRCDECDYESKRSSEMKHHQLTHKAPSEVQMYRCDVCDYEAKYKTAVKSHQLMHKDPSEVQMYKCDTCIYGTRYKNHLKTHLLTHTHPSEIHMYKCDVCAYGTKRKGDLRNHKFSHQNPSQIQMYKCDTCNFQTKYKRSLKNHHLTHKDPSQIQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -