Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:43042721-43046170[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0024 0.17 13.8 4.2 1 23 60 82 60 82 0.99

2 17 0.0028 0.2 13.6 6.5 1 23 90 112 90 112 0.99

3 17 0.035 2.5 10.2 4.1 1 23 121 143 121 143 0.98

4 17 0.0051 0.37 12.8 4.9 1 23 152 174 152 174 0.98

5 17 0.066 4.8 9.3 4.4 1 23 211 233 211 233 0.98

6 17 0.00035 0.025 16.5 0.7 1 23 238 260 238 260 0.98

7 17 0.055 3.9 9.6 3.6 1 23 269 291 269 291 0.98

8 17 0.0051 0.37 12.8 2.9 1 23 300 322 300 322 0.98

9 17 0.072 5.2 9.2 6.6 1 23 331 353 331 353 0.99

10 17 0.038 2.8 10.0 4.6 1 23 362 384 362 384 0.98

11 17 0.012 0.9 11.6 5.0 1 23 391 413 391 413 0.98

12 17 0.00016 0.012 17.5 0.5 1 23 422 444 422 444 0.98

13 17 0.0018 0.13 14.2 4.2 1 23 453 475 453 475 0.98

14 17 0.0054 0.39 12.7 3.8 1 23 484 506 484 506 0.98

15 17 0.0041 0.29 13.1 2.8 1 23 515 537 515 537 0.99

16 17 0.029 2.1 10.4 8.0 1 23 546 568 546 568 0.99

17 17 0.00063 0.045 15.7 2.8 1 23 577 599 577 599 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0024	0.17	13.8	4.2	1	23	60	82	60	82	0.99
2	17	0.0028	0.2	13.6	6.5	1	23	90	112	90	112	0.99
3	17	0.035	2.5	10.2	4.1	1	23	121	143	121	143	0.98
4	17	0.0051	0.37	12.8	4.9	1	23	152	174	152	174	0.98
5	17	0.066	4.8	9.3	4.4	1	23	211	233	211	233	0.98
6	17	0.00035	0.025	16.5	0.7	1	23	238	260	238	260	0.98
7	17	0.055	3.9	9.6	3.6	1	23	269	291	269	291	0.98
8	17	0.0051	0.37	12.8	2.9	1	23	300	322	300	322	0.98
9	17	0.072	5.2	9.2	6.6	1	23	331	353	331	353	0.99
10	17	0.038	2.8	10.0	4.6	1	23	362	384	362	384	0.98
11	17	0.012	0.9	11.6	5.0	1	23	391	413	391	413	0.98
12	17	0.00016	0.012	17.5	0.5	1	23	422	444	422	444	0.98
13	17	0.0018	0.13	14.2	4.2	1	23	453	475	453	475	0.98
14	17	0.0054	0.39	12.7	3.8	1	23	484	506	484	506	0.98
15	17	0.0041	0.29	13.1	2.8	1	23	515	537	515	537	0.99
16	17	0.029	2.1	10.4	8.0	1	23	546	568	546	568	0.99
17	17	0.00063	0.045	15.7	2.8	1	23	577	599	577	599	0.99

Sequence Information

Coding Sequence: ATGGAAGGTCTATCGGACATCAAATGTGAAGATATCGAAACCAAATTTGAAGAGAATTATTGgGACACTTCCATACACAACTTAAAAGAGGAACCTGTCGACTGCACAGAAGAATGCCGAtctgaaaatgtaaaaacaacGGATAATTCGTTAAAGCACAGAGTTTTTGAAACGATGTTTAAATGTGACTCTTGCGATTACGAAACCGATCGAATGACGAATCTTAAACATCATCAACGTAGACACGATGTCTCAGAAGAGCAAATGTTTAAATGTAATTCGTGCGATTATAAAACGGTTTATAAAAGTCACTTTATGAATCATCAGCGAAAACACAAAGACATCCCCGAAGAAcaaatgtttaaatgtgattcctgtgattttaaaacaatatacaaGTTCAATTTTACAAACCATCAGCTGAAACACAAAGAGGTGCCTGAGGAGCAGATGTTTAAATGTGACtcgtgtgattataaaacgagCCGAAAGAACTATTTTAAGCAGCATCAACTAAAACACACCGAAGATCAGATGTATAAATGCGAGGTGTGCGATTATAAAACCCATTTAAAGTACCAAATTAAATTCCATCAACTAAAACACAAAGATATCCCGGAGGAGcagatgtttaaatgtgattCGTGTGATTACAAAACCATTTTTAAGATCTATCTTACGCATCATCAACTAAAACACAAGGAGCACATCTTTAAATGTGATTTATGCGATTATAAAAGTGGGAACAAGTACTCTCTCGCACGACATCAGCTCATACACAAAGACAAATCCAAGGTGcagatgtttaaatgtgattcgtgcaattataaaactgtttataaAGCTTCGTTTAAGTATCATCAGCTAAAACACAAAGACATTCCCGAGGAGCAAATGTTTAAATGTGACTCCTGCGATTATAGAACCGTTCGCGAGATACACTTTAGGCGGCATCAGCTAATACACAAAAACGTCGCCGAAGGTCAGATGTATAAATGCGATTTGTGTGATTTTAATTCTATTTATAAACACTGCCTTACGCGCCATCAGCTCAAACACAAAGACATTTCCAAGGTACAAATGTTTGAATGTAACTCCTGcgattataaaactgtttataaGGCCTACTTTAAGCATCACCAGCTAAAACACAAAGACGTCCCTGAATTGTTTAAATGTGATACATgcaattataaaactatttataaacGTTATTTTACCCGACATCAGTTAAGGCACAAAGACATCCCCAAAGATCAGATGTATCGGTGTTATGTGTGTGACTATATAACGACCCAAAAGAGTTCTCTGGCAGTACATCTGCTAAAACACAAAGATGTCCCCGAAGATCAGATGCATAAGTGTGATTTGTGCGACTTTATAACGACTCAAAAGAGGTATCTTACAAGACATCAGCTAAGACACAAAAACAACCATGAGGAGCAGACGTATGAATGTTATTTGTGCCATTATACAACGACACAAAAGAGGTATCTCGCAACACATCTGCTAAGACACAAAGACGTCTCCAGAGGTCAGATGTATAAGTGTtatttgtgtgattataaaacagTTTATAAGGTATATCTGAAGCAACATCAGCTAAGACACAAAGACATCCCTAAAGAGCAGTTGTATCAGTGTTGTTTGTGTGACTACATAACTACTCAAAAGAGCTGTTTTACGAAACATCAGTTGAAACACAAAGACGTCACTGAAGATcagatgtataaatgtgatttgtgtgatttcAAAACCATTTATAAGAAGAGTCTTAGACGCCATTTGATGAGACACGAATTCACGGATATAAAAAAAGATCTTATACTACCAACTGAGACACAAAGCCCTCTCGAAGGAACGGATGTATAA
Protein Sequence: MEGLSDIKCEDIETKFEENYWDTSIHNLKEEPVDCTEECRSENVKTTDNSLKHRVFETMFKCDSCDYETDRMTNLKHHQRRHDVSEEQMFKCNSCDYKTVYKSHFMNHQRKHKDIPEEQMFKCDSCDFKTIYKFNFTNHQLKHKEVPEEQMFKCDSCDYKTSRKNYFKQHQLKHTEDQMYKCEVCDYKTHLKYQIKFHQLKHKDIPEEQMFKCDSCDYKTIFKIYLTHHQLKHKEHIFKCDLCDYKSGNKYSLARHQLIHKDKSKVQMFKCDSCNYKTVYKASFKYHQLKHKDIPEEQMFKCDSCDYRTVREIHFRRHQLIHKNVAEGQMYKCDLCDFNSIYKHCLTRHQLKHKDISKVQMFECNSCDYKTVYKAYFKHHQLKHKDVPELFKCDTCNYKTIYKRYFTRHQLRHKDIPKDQMYRCYVCDYITTQKSSLAVHLLKHKDVPEDQMHKCDLCDFITTQKRYLTRHQLRHKNNHEEQTYECYLCHYTTTQKRYLATHLLRHKDVSRGQMYKCYLCDYKTVYKVYLKQHQLRHKDIPKEQLYQCCLCDYITTQKSCFTKHQLKHKDVTEDQMYKCDLCDFKTIYKKSLRRHLMRHEFTDIKKDLILPTETQSPLEGTDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -