Malt042744.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:43073064-43079856[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.0012 0.086 14.8 3.9 1 23 122 144 122 144 0.99
2 14 0.00069 0.05 15.5 3.6 1 23 152 174 152 174 0.99
3 14 0.005 0.36 12.8 0.3 1 23 183 205 183 205 0.98
4 14 0.00062 0.045 15.7 5.2 1 23 214 236 214 236 0.99
5 14 0.00093 0.067 15.1 1.2 1 23 243 265 243 265 0.99
6 14 0.018 1.3 11.0 5.1 1 23 274 296 274 296 0.98
7 14 0.0012 0.086 14.8 3.9 1 23 433 455 433 455 0.99
8 14 0.0028 0.2 13.6 5.0 1 23 463 485 463 485 0.99
9 14 0.0055 0.4 12.7 0.5 2 23 495 516 494 516 0.97
10 14 0.0011 0.079 14.9 5.3 1 23 525 547 525 547 0.99
11 14 0.0011 0.076 15.0 1.4 1 23 554 576 554 576 0.99
12 14 0.14 10 8.2 2.6 1 23 585 607 585 607 0.98
13 14 0.084 6.1 9.0 6.0 1 23 613 635 613 635 0.98
14 14 0.0021 0.15 14.0 3.1 1 23 644 666 644 666 0.98

Sequence Information

Coding Sequence
ATGAATACTGATGTTGGTTCATTTGCCACTCATTTCGTAAATGGCTGTTTGGATATGAAAGAAGTTGAAGATGCCGGTTATGGCAAACCCATTGAAAACCTGTCTGCTATTAAACAtgaatatgttgatattaaatcTGAAGAGAATTATAGtaacacccaGAATTTGAAAGTTGAACTTATCGACTACCCTTACACAGGTTTATTAACGAACTGTTTTAATGTGAAGGAGGAAATTAAAGATATGTGTGAGAACAACAACCTGGAAAGTTTATCCAATATTAAATGTGAAGGTATTGAAATCAAATCGGAAGAATATTATAGTGACCCGTCCTTACAGAGCTTGAAGGACAAGAAGGAGATATATAAATGTAACTCTTGTGGCTATGAGACtaatcaaaagaaatatttcactAGACATCAGCTTAGGCACAACGTCCCTGAAGAGCGGATGTTTAAGTGTGATTCGTGCGATTATAAAACGGTTTATAAAAGTCAGTTTAAGGTACATCAGCGAAGACACAAAGGTGTACCTGAGGAACAGATGTTTAAATGCGATTCCTGtggttttaaaacaatttataaggCTGGATTGATAAATCATCAGCTGGTGCACAGAGAAGTGTCAGAGGAGCAGATGTTTAAGTGTGACTCGTGTGATTTTAAAACGAGACGAAAGAACAACCTAAAGCAACATCGACGAAGACACAACTTCGATAATCTGATATATAAATGTGATGTGTGTGATTATAAAGCCGCTTCCAAGTACCAATTTAGAGACCATCAGTTAAGACACAAGGATATTCCTGAGGAGCAGATGTTTAAATGCGATTTATGTCATTATAAATCCCCTTATAAGAAGTATTTAACGCAACATCAGTTAAGACACAAATACATCCCCGAAGATCAGATAcataaatGCGTAAGGAATACTGGTATTGGTTCATTTGCCGTCATTCATTTCTTAAATGACTGTTTGGATATGAAGGAAGAAATTGAAGATGGCGATTATGGCAAAGCCATTGAAAACCTGCCTAATATTAAACGTGAAGATGAAATCAAACCTGAAGAGGATTATAGTGACACCCTCTTACAGAATTTGAAAGTTGAACCTATGGACTACCCTTACACAGGTGTATTAACAAACTGTTTTAATGTGAAGGAGGAAATTGAAGATATGTGCGGGAACAACACCCTAGAAAGTTTGTCCAGTATTAAATGTGAAGGTATTGAAATCAAATCGGAAGAATATTATAGTGACCCATCCTTACAGAGCTTGAAGGACAAGAAGGAGATATATAAATGTAACTCTTGTGGCTATGAGACtaatcaaaagaaatatttcactAGACATCAGCTTAGGCACAACGTCCCTGAAGAGCGGATGTTTAAGTGTGATTCGTGCGATTATAAAACGGTTTATAAAAGTCATTTTATGATACATCAGCGAAGACACAAAGGCGTGCCCGAGGAACAGATGATTAAATGCGATTCCtgtgattataaaacaatttataagGCTAGTTTGAAAAGCCATCAGTTAGTACACAGAGAAGTGTCCGAGGAGCAGATGTTTAAGTGTGACtcgtgtgattataaaacgagACGAAAGAACTACCTAAAGCAGCATCGACGAAGACACGACTTGGACGATCTGATGTATAAATGTGATGTGTGTGATTATAAAGCCGTTTCCAAGTACCAATTTAGAGACCATCAGCTAAGACACAAGGATGTTCCTGAGGAGcagatgtttaaatgtgatgcttgtgattataaaacagttcttaagaaatattttacacaacatCAGTTGAAACACAACGAGGAGCGAATGTTTAAATGCGATTTATGTCATTATAAATCTCCTTATAGGCACTATTTAACGGAACATCAGTTAAGACACAAAGACATCCCCGAAGATCAGATAtataaatgtgatttgtgtgattttaaaacCATTTCTAAGAAAAGTCTTACCCGTCATCATATAATACACTAA
Protein Sequence
MNTDVGSFATHFVNGCLDMKEVEDAGYGKPIENLSAIKHEYVDIKSEENYSNTQNLKVELIDYPYTGLLTNCFNVKEEIKDMCENNNLESLSNIKCEGIEIKSEEYYSDPSLQSLKDKKEIYKCNSCGYETNQKKYFTRHQLRHNVPEERMFKCDSCDYKTVYKSQFKVHQRRHKGVPEEQMFKCDSCGFKTIYKAGLINHQLVHREVSEEQMFKCDSCDFKTRRKNNLKQHRRRHNFDNLIYKCDVCDYKAASKYQFRDHQLRHKDIPEEQMFKCDLCHYKSPYKKYLTQHQLRHKYIPEDQIHKCVRNTGIGSFAVIHFLNDCLDMKEEIEDGDYGKAIENLPNIKREDEIKPEEDYSDTLLQNLKVEPMDYPYTGVLTNCFNVKEEIEDMCGNNTLESLSSIKCEGIEIKSEEYYSDPSLQSLKDKKEIYKCNSCGYETNQKKYFTRHQLRHNVPEERMFKCDSCDYKTVYKSHFMIHQRRHKGVPEEQMIKCDSCDYKTIYKASLKSHQLVHREVSEEQMFKCDSCDYKTRRKNYLKQHRRRHDLDDLMYKCDVCDYKAVSKYQFRDHQLRHKDVPEEQMFKCDACDYKTVLKKYFTQHQLKHNEERMFKCDLCHYKSPYRHYLTEHQLRHKDIPEDQIYKCDLCDFKTISKKSLTRHHIIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-