Malt022633.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073429.1:67160025-67162635[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.15 11 8.2 0.6 2 23 179 199 178 199 0.96 2 11 0.089 6.4 8.9 1.3 2 23 205 227 204 227 0.92 3 11 2.3 1.6e+02 4.5 0.6 2 23 235 257 234 257 0.88 4 11 0.0019 0.14 14.1 1.9 1 23 281 303 281 303 0.97 5 11 0.076 5.5 9.1 0.1 2 23 307 327 306 327 0.95 6 11 0.00092 0.067 15.1 1.1 2 23 333 355 332 355 0.93 7 11 2.5e-05 0.0018 20.1 1.0 1 23 360 383 360 383 0.97 8 11 0.00019 0.014 17.3 5.8 1 23 389 412 389 412 0.97 9 11 2.4e-05 0.0017 20.1 5.2 1 23 418 440 418 440 0.97 10 11 8.3e-06 0.0006 21.6 1.1 1 23 446 469 446 469 0.97 11 11 2.2e-05 0.0016 20.2 0.1 1 23 477 499 477 499 0.98
Sequence Information
- Coding Sequence
- ATGCAAAATCTTAAAATGTGCCGACTATGTATGGCACAGCCTCCAGTCTCGTATTCTTTATTGGAATCAAATGAAGCAAATATATTGGAAACCTTGACTTCTATAAagGTATCTAAAGAAGACAATCTTCCAAAGAGGGCTTGTGTCAAATGTtggctaaatttaaaattagctTATCAAATTCAGCAGAATATTATAGAATGTGATAAAAAGCTAAGATTGTTTGACGTTGAACAAGAACCCGATAATGTAGATCCAGTTCCTGAGGTAGTTGAtacaattcaaaatattaaagaggAAAAACTTGAACTTGTATACAAAACCGAACCTGAAGATGACTCCGACTATATGGATTCAGAAATGGATACATCGGAGGTTAATAATATCAAGGTTGAAAATCTCACAGAAAGTGACCTTTTGATAATATGTCCACTAGGAACAGGTGACGAAAATACTGAAATGGTTAAAAAggaaattgctgaaaaaatcgaCAGAACTGAAAAATTACCAGTGaaagttgaaaaaatttcagttaGTTGCCACATCTGTGGAACTCGTACAGAAGAAAACTTGTTGATAGATCATCTAAAAACCCATTATTCTAGCAGGCTGCAATGCGACGAGTGCAATACATACTGTGAAAACATATCGTCTTACAGAAAACACGTCTTAGCTAACCACAAAGATATGCAAGAGTCATGGACCTGTAAAATTTGTGCAGCACATTTCCAGTATAAACCACTTTTTAAGATCCATAGCGAGCAAGCCCATGTCACTGAAGTAGCCCCTCCCCGCAGGAGAAAAGCACTATTTGCCAAGTCTATATTACAAGATTACAAATACGATTGCCCTTACTGCAACAGAAAATTCAAAACAGAACAAACGAGTTTGTCACATATAAAAACGCACAATAAAAAGGAATGCCCTGTGTGCGGGGTAAAAATAACGCCGTCGAATTTCAAGGTGCATGTGGATTCGCATACTTCACCTCCTATGGTGTGTCACCTGTGTGGCGTTACCTACAAAAACCTGACTTCCTTAAGAAGTCACATTTATTACACCCACTCGACGAGGAAGTATACCTGTAAATATTGTGATAAAGTGTTCAAGAAAGCTTATGATCTACCCTTGCACATTAAAAAGGAACATACAGgacAAAGGGATCATACATGTGATATCTGCGGCAAGAGTTTCTATGCAttccataatttaaataaacacaaaaaaacAACGCATATGAAGTTAAGGCCCTTCATGTGTCAGTATTGCAAGAAATCATTTTCCTCAAAGCATGCCCTGAGGACTCATGAACGTCAGCATACAAACATCACCCCGTACACTTGCACGATATGCGGAGAAGGCTTTAGACAGAACGTCTCATTGAGATCTCATAAAAAATCCAAACACAACATAGTGGAGGTTAAAACGTTCCCATGCTCAGTTTGTGGGAAGAAGTTCGGGTCCAAATGGGCAGTGCTTAGTCATATGAGAGTACattaa
- Protein Sequence
- MQNLKMCRLCMAQPPVSYSLLESNEANILETLTSIKVSKEDNLPKRACVKCWLNLKLAYQIQQNIIECDKKLRLFDVEQEPDNVDPVPEVVDTIQNIKEEKLELVYKTEPEDDSDYMDSEMDTSEVNNIKVENLTESDLLIICPLGTGDENTEMVKKEIAEKIDRTEKLPVKVEKISVSCHICGTRTEENLLIDHLKTHYSSRLQCDECNTYCENISSYRKHVLANHKDMQESWTCKICAAHFQYKPLFKIHSEQAHVTEVAPPRRRKALFAKSILQDYKYDCPYCNRKFKTEQTSLSHIKTHNKKECPVCGVKITPSNFKVHVDSHTSPPMVCHLCGVTYKNLTSLRSHIYYTHSTRKYTCKYCDKVFKKAYDLPLHIKKEHTGQRDHTCDICGKSFYAFHNLNKHKKTTHMKLRPFMCQYCKKSFSSKHALRTHERQHTNITPYTCTICGEGFRQNVSLRSHKKSKHNIVEVKTFPCSVCGKKFGSKWAVLSHMRVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00110843;
- 90% Identity
- -
- 80% Identity
- -