Malt042793.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:43362863-43378736[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0025 0.18 13.8 5.7 1 23 138 160 138 160 0.98
2 22 0.011 0.8 11.7 2.5 1 23 169 191 169 191 0.98
3 22 0.0024 0.17 13.8 1.8 1 23 200 223 200 223 0.97
4 22 0.0054 0.39 12.7 6.5 1 23 232 254 232 254 0.99
5 22 0.014 1 11.4 4.7 1 23 263 286 263 286 0.97
6 22 0.0027 0.2 13.6 3.2 1 23 295 317 295 317 0.99
7 22 0.051 3.7 9.7 2.0 1 23 326 349 326 349 0.95
8 22 0.0096 0.7 11.9 3.3 1 23 357 379 357 379 0.99
9 22 0.013 0.91 11.6 2.4 1 23 388 411 388 411 0.97
10 22 0.24 17 7.5 7.3 1 23 420 442 420 442 0.98
11 22 0.0012 0.088 14.8 2.1 1 23 451 474 451 474 0.97
12 22 0.33 24 7.1 4.6 1 23 483 506 483 506 0.91
13 22 0.091 6.6 8.9 4.1 1 23 515 537 515 537 0.98
14 22 0.00051 0.037 15.9 2.7 1 23 572 594 572 594 0.99
15 22 0.015 1.1 11.3 2.5 1 23 603 625 603 625 0.97
16 22 0.1 7.5 8.7 2.3 1 23 634 656 634 656 0.98
17 22 0.036 2.6 10.1 1.6 2 23 666 687 665 687 0.96
18 22 0.039 2.8 10.0 4.9 1 23 696 718 696 718 0.97
19 22 0.0077 0.56 12.2 2.7 1 23 724 747 724 747 0.94
20 22 0.036 2.6 10.1 2.2 1 23 756 778 756 778 0.98
21 22 0.024 1.8 10.7 3.3 1 23 787 810 787 810 0.95
22 22 0.63 46 6.2 8.5 1 23 819 841 819 841 0.99

Sequence Information

Coding Sequence
ATGGATATCGATGTTGGGTCATTTGCCACCAACACGAATTTCTTAAATGATCCTTACAATGTGAAGGAAGAAGTTGAACATGTCGATTATGGCAAAGTCATGGAAAGTTTGTCAGATATTAAGCAGGAAGACCTGGAAATCAAATCTGAAGAGAATTATAGTGGCAACCGCTTACAGAATTTAAAAGATGAGCCTGACGACTGCACTGGCACAAGTTTATTAACAAACTGTTTTAATGTAAAGGAGGAAATTAAGGATATTTGCGACGACAAAGCTATAGAAAGTTTGTCCAATATTAAATGTGAAGACATTGAAATTAAATCGGAAGAGGATTTTAGTAGCACCCCCTTGAAAGATGAATCCACAAGTGAACATCAGTTAAGGTATAAGGACATCCCTGAAGATCGGATGTATAGATGTGACTCATGCGATTATAAAACTTGTCGAAAGCGAAATCTTAACCAACATCAGCTGAGACACAAAAACATACCCGAAACACggatgtataaatgtgattcgtgtgattataaaaccatttataaggGCTATTTTACGAAACATCTGATAAAACACAAAGATGTCCTCAATGTGCAGATGTATAAATGTGACTCGTGTGATTATAAATCTATTTATAAGGCCAACCTTACGCAACATCAGCtaaaaaaacataaagatatatCCGAAGAAGATATGTATAAATGCAATTTCtgtgattataaaactatttataagaGCTGTCTTACAAAGCATCAGTTAAAACACAAAGATGTTCTTAAAGTGCAGATGTATCATTGTGATTTGTGCgattttaaaacgaaatataaggCCAACCTCACACAACATCAGTCAAAGAAACATGAAGATATCCCTGAAGAAGatatgtataaatgtgattcatgtaattataaaaccatttataagaGTTATCTTACACAGCATCAGTTAAGACACGAAGACATTTTCAAAGAAcagatgtataaatgtgattggtgtgattttaaaacgaaataCAAGGCCAACCTTAGACCACATCAGTTtatgaaacataaaaatatcCCCGAAGATATATATAAATGTGATCTATGCAattttaaaaccatttataagaGCTTTCTCACACAACATCAGTTAAAACACAAAGATGCTCTCAAAGTCCACATGTATGAATGTGattcatgtaattttaaaacGAAGTATAAGAACAACCTTATACAGCATCAGTCCATGAAACACAAAAATATCCCGGAAGGAAATACGCATAAGTGTGATTCATGTGATTTTAGAACTATTTTTAAGAGCTGTCTCACGCGACATCAGTTAAAACACGAAGATGTTCTCAAAGCACAGATGTATCAGTGTGATTCgtgtgattttaaaacaaaatataacagTAACCTGATACAGCACCAGTCAATGAAACACAAAAATATCCCCGAAGAAGATATGCATAAATGTGATTCGTGTGATTATAAGACAAAATATAAGACCAGTCTTACCCAACACTTTATACTGAAACATAAAGATATCCCCGAAGAAGATATGTACAAGTGTGAATCATGTGATTTTAAAACTGTCTATAAGTCCTATCGTAGACGGCATCAGTTAAAACACAAAGCGCAGATtgacaCTCCTTTACAGAACTTGAAAGACGAACCTGATTCCAGAGACAAGTGCAGCGGGTTAAATCACTTAGTCTTCTTTGAAAAGGAGATATATAAATGTAACTCTTGTGACTATGAGACCGATCGAAAAAGAAATTTGAGTAGACATCAGCTTAAACACAAGACCGTTCCAGAAGAATCAATGCACAGATGTTATGCGTGCGATTATAAAACGGCTCAAAAAAGTTACCTTGCAAAACATCTGCTAAGACACAAAGATATACCCGAAGAGGCGATGTATAAGTGTGATTCATGCGATTATAAAACTGGTGTGAAGAGATACCTTACACAACATAAACTAAGACACAGAAACTTATCAGTGAATCAGATGCTTAAATGCGATTCATGTAATTACGAAACGTTTTATAAAAGCCTTCTTATACGACATCGGCTCAAACACGAAGACATCTCCAAGGTGCAGATGCACGAATGTGATTCCTGTGACTTTAAAACGAGATATAAGAACTACCTTACGCGACATCAGTTGAAACACATAGACGTTCAGATGTATCAGTGTGACTCGTGtgattttaaaacgaaatataagaCCAACCTTACGCAACACCAGTCCGCGAAACATAAAGATGTCCCCGAAGAAGAcatgtataaatgtgatttgtgtgattataaaaccatttataagaaCTATATTACGCAGCATCAGTTAAAACACAAAGACATTCTCAAAGTGCAGATGTATCGATGTGATTCGTGtgattttaaaacgaaatataagaACAATCTTACACAGCACCGGTTGCTGAAACATAAAGGTATCTCCGAAAAAGATATGTATAAGTGTGATTCATGCGACTTTAAAACTGTGTATAAGTGCTGCCTTACACGACATCAGCAAAAACATCAGACCGTTAGTTAA
Protein Sequence
MDIDVGSFATNTNFLNDPYNVKEEVEHVDYGKVMESLSDIKQEDLEIKSEENYSGNRLQNLKDEPDDCTGTSLLTNCFNVKEEIKDICDDKAIESLSNIKCEDIEIKSEEDFSSTPLKDESTSEHQLRYKDIPEDRMYRCDSCDYKTCRKRNLNQHQLRHKNIPETRMYKCDSCDYKTIYKGYFTKHLIKHKDVLNVQMYKCDSCDYKSIYKANLTQHQLKKHKDISEEDMYKCNFCDYKTIYKSCLTKHQLKHKDVLKVQMYHCDLCDFKTKYKANLTQHQSKKHEDIPEEDMYKCDSCNYKTIYKSYLTQHQLRHEDIFKEQMYKCDWCDFKTKYKANLRPHQFMKHKNIPEDIYKCDLCNFKTIYKSFLTQHQLKHKDALKVHMYECDSCNFKTKYKNNLIQHQSMKHKNIPEGNTHKCDSCDFRTIFKSCLTRHQLKHEDVLKAQMYQCDSCDFKTKYNSNLIQHQSMKHKNIPEEDMHKCDSCDYKTKYKTSLTQHFILKHKDIPEEDMYKCESCDFKTVYKSYRRRHQLKHKAQIDTPLQNLKDEPDSRDKCSGLNHLVFFEKEIYKCNSCDYETDRKRNLSRHQLKHKTVPEESMHRCYACDYKTAQKSYLAKHLLRHKDIPEEAMYKCDSCDYKTGVKRYLTQHKLRHRNLSVNQMLKCDSCNYETFYKSLLIRHRLKHEDISKVQMHECDSCDFKTRYKNYLTRHQLKHIDVQMYQCDSCDFKTKYKTNLTQHQSAKHKDVPEEDMYKCDLCDYKTIYKNYITQHQLKHKDILKVQMYRCDSCDFKTKYKNNLTQHRLLKHKGISEKDMYKCDSCDFKTVYKCCLTRHQQKHQTVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-