Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073433.1:51470416-51472279[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.072 5.2 9.2 1.2 1 23 54 76 54 76 0.97

2 16 1.1 81 5.4 3.2 2 23 81 102 80 102 0.96

3 16 0.00051 0.037 15.9 4.1 1 23 115 137 115 137 0.98

4 16 2.6e-05 0.0019 20.0 0.7 1 23 143 165 143 165 0.97

5 16 6e-06 0.00044 22.0 0.5 1 23 171 194 171 194 0.98

6 16 0.023 1.6 10.8 0.3 3 20 202 219 200 220 0.94

7 16 0.13 9.6 8.3 0.8 2 23 231 252 231 252 0.97

8 16 0.0042 0.31 13.1 0.4 1 23 266 288 266 288 0.98

9 16 0.0067 0.49 12.4 2.4 1 23 305 327 305 327 0.96

10 16 0.0065 0.47 12.5 1.9 2 23 333 355 332 355 0.96

11 16 0.0007 0.051 15.5 2.9 1 23 389 412 389 412 0.96

12 16 0.0008 0.058 15.3 1.3 1 23 419 442 419 442 0.97

13 16 0.061 4.4 9.4 2.2 1 23 448 470 448 470 0.97

14 16 4.1 3e+02 3.7 2.9 1 10 488 497 488 508 0.82

15 16 6.5e-05 0.0047 18.8 1.7 1 23 523 545 523 545 0.96

16 16 1.1 77 5.5 0.3 3 23 554 574 552 574 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.072	5.2	9.2	1.2	1	23	54	76	54	76	0.97
2	16	1.1	81	5.4	3.2	2	23	81	102	80	102	0.96
3	16	0.00051	0.037	15.9	4.1	1	23	115	137	115	137	0.98
4	16	2.6e-05	0.0019	20.0	0.7	1	23	143	165	143	165	0.97
5	16	6e-06	0.00044	22.0	0.5	1	23	171	194	171	194	0.98
6	16	0.023	1.6	10.8	0.3	3	20	202	219	200	220	0.94
7	16	0.13	9.6	8.3	0.8	2	23	231	252	231	252	0.97
8	16	0.0042	0.31	13.1	0.4	1	23	266	288	266	288	0.98
9	16	0.0067	0.49	12.4	2.4	1	23	305	327	305	327	0.96
10	16	0.0065	0.47	12.5	1.9	2	23	333	355	332	355	0.96
11	16	0.0007	0.051	15.5	2.9	1	23	389	412	389	412	0.96
12	16	0.0008	0.058	15.3	1.3	1	23	419	442	419	442	0.97
13	16	0.061	4.4	9.4	2.2	1	23	448	470	448	470	0.97
14	16	4.1	3e+02	3.7	2.9	1	10	488	497	488	508	0.82
15	16	6.5e-05	0.0047	18.8	1.7	1	23	523	545	523	545	0.96
16	16	1.1	77	5.5	0.3	3	23	554	574	552	574	0.92

Sequence Information

Coding Sequence: ATGGaacaagaaaataaactaattgaGAACGAAATTGATCAGCACATTGAAGCTTTACTTAAAAGACCCGTTATTAAAGAAGAAAGAGACATTCCGGATTATGTTGACATAAATACTTTTTCAGAAATAAAGTTAAAATCTCaagatataacaaaaatataccgATGCACGCAGTGTTcaaataaatacagtaaaattgaGTACTTGACTATGCACACTGCAGTCCACGCTGAAGAAATGATGTGCACTCTTTGTtatgaaatgtttttttgtaGAAAGCAGTTGAGGGAACATATAAATAGtcacataaaacataaaatgatTGACGATAAGAAAGTTATATATAGCTGCACGTACTGCCCAAAAAGTTTCAATACTAGAAAACAACATACCATACATCTTAGAGTGCACACAAATGAGAGACCGCATAAATGTAAAATCTGTGGGGAAGGATTCAAGCAGTTGGGTGCTTTAAAAGATCACCGCGTTACCCACACGAAGGAAAAAAGATACGTTTGTGAGATTTGCAAAGGTGCTTTTACAACAGCCTCAAGTTTGAAGAGGCATAAGAGAAGAATTCATGAAAGAGGCAGAAGTATGGACTGTACAATATGTAacgttaaattttacaataaggCCGATTACAATACTCATAGATCGTGCGTTCACCCGCACATCGGTTATAAAAGAACCTGCCCTCTCTGTTCTTCCGTGTTCTACAGCAGACTTTCATATAACACCCACAAACAGGTACATAACGATCACCtgccaaaaaacaaaaaattgttcgTGAGTTATGTGTGTAGCCTATGCGGAGAGGAAACGAAAAGTTTGAAGCTATTTATGGAGCATAGACGCTGGCATTTGTCCTACACCGATTATGAGTTAAAGCAAGCCATAAAGTTAAAATTGTTTCCATGTAAGTTTTGTCCCATCATTTATAAATCGAAGCAATGCCTCTTCAATCACATGGACCTACATAAGGATAAAGTTATTAGATGCAATTTGTGCCATAGCAGCTTTTCAACTTATTTAGGACTGACAGCGCACAAGAGAAGAGTACATCAAATAATAAACTGCCGTATGTGCAATGACGTTATTATAGGAAGATCAAATATGTATAACCATTACAAAAAACGTCACACCACTAATCTCACGAAGAATTACCAGTGTAATATTTGCGGCAAGAGATGTGAACTGAAGACTATGCTTAAATGGCACTACAACCTCAAGcatcaaataaatgtcaaaaactTCAAATGCGGCTTATGCGTAAAGCGTTTCGTGACACAGTACGCTATTACGAGGCATAAGAAGAAAGCACATAAACTTAGAGTTCAATTCAAGTGTTCCAAATGCGATTTAACTCTAAAAACAATTAAGGAGATGAAAATGCATAAATCATCACACACAAACGAAGAGCCAGGTAGCAAAAAAACGGTAGTGAAAACGCCGAAGCATTTCCGATGTAAAGTGTGCAAGAAATTCTTCCAATGTGTCAAAAATTACGAAATCCATGCGTCTCTAAACACCTGCGTGAAATATTACATCGAACAGGGTCGGTTGCACGTTTGTGAATTTTGTAACAAGAGTTTCTCGAAGGCAGATCGTTTGAGGAGGCATGTAGAGGTACATTATCCCAGAAAAGAAGCGTACTGGTGCCAGTATTGTAAGCAAGAATTTGGTATTCGATCAGACTATGAAATACATAATAGTTTGCATATGATGAAAATTGAAGGAGAAGACAATGTTGTACAAGGTGTCAGCTGTGGTGATTTGAAATGTGAAGTAAAAATGGAAAGTTAG
Protein Sequence: MEQENKLIENEIDQHIEALLKRPVIKEERDIPDYVDINTFSEIKLKSQDITKIYRCTQCSNKYSKIEYLTMHTAVHAEEMMCTLCYEMFFCRKQLREHINSHIKHKMIDDKKVIYSCTYCPKSFNTRKQHTIHLRVHTNERPHKCKICGEGFKQLGALKDHRVTHTKEKRYVCEICKGAFTTASSLKRHKRRIHERGRSMDCTICNVKFYNKADYNTHRSCVHPHIGYKRTCPLCSSVFYSRLSYNTHKQVHNDHLPKNKKLFVSYVCSLCGEETKSLKLFMEHRRWHLSYTDYELKQAIKLKLFPCKFCPIIYKSKQCLFNHMDLHKDKVIRCNLCHSSFSTYLGLTAHKRRVHQIINCRMCNDVIIGRSNMYNHYKKRHTTNLTKNYQCNICGKRCELKTMLKWHYNLKHQINVKNFKCGLCVKRFVTQYAITRHKKKAHKLRVQFKCSKCDLTLKTIKEMKMHKSSHTNEEPGSKKTVVKTPKHFRCKVCKKFFQCVKNYEIHASLNTCVKYYIEQGRLHVCEFCNKSFSKADRLRRHVEVHYPRKEAYWCQYCKQEFGIRSDYEIHNSLHMMKIEGEDNVVQGVSCGDLKCEVKMES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -