Malt039266.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:19578927-19587471[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6e-05 0.0043 18.9 2.9 1 23 339 362 339 362 0.97 2 13 0.63 46 6.2 2.1 1 23 377 400 377 400 0.80 3 13 0.0014 0.1 14.5 0.1 1 23 413 436 413 436 0.93 4 13 0.0012 0.089 14.7 0.7 2 23 439 460 438 460 0.97 5 13 1.4e-06 0.0001 24.0 2.0 3 23 466 486 464 486 0.96 6 13 0.026 1.9 10.6 8.4 3 23 494 514 492 514 0.95 7 13 0.14 10 8.2 1.0 1 23 520 543 520 543 0.96 8 13 0.0001 0.0072 18.2 6.5 1 23 549 572 549 572 0.97 9 13 3.4e-05 0.0024 19.7 0.4 1 20 578 597 578 598 0.96 10 13 0.00019 0.014 17.3 0.8 2 23 626 647 625 647 0.97 11 13 4.7e-05 0.0034 19.2 3.1 1 23 653 675 653 675 0.98 12 13 4.7 3.4e+02 3.5 0.5 1 23 680 703 680 703 0.87 13 13 0.032 2.3 10.3 5.8 1 23 709 732 709 732 0.92
Sequence Information
- Coding Sequence
- ATGTGCacagtaattattaatatattttcaagtaCTTCCTGTCGTTGTTTCGTACCTGGATGCCCTAATTCGGAAGAAAATGCAACAAATGCAACATTCCACAAATTTCCTGAACAATTACAAGATGAATGGCTTATAGCCATAGGCAGAAGCAGAGACAATTTCATCATAGACGAGCTTGTATGTTCAGAACACTTTGAAATTAGCGACTATGAAGATTACGACTCGCTCaagatattaaaaacaaatgccTTACCCACATTAAATTTGCCTACAGAACCTGAAGAATGTTCAGTGATGTTGAATGCCGAGGTGAATACCAGTAGTTGTGAACAAATTCAACAGCTGGTacaaaaatataattccCTTGAGAAGAGTAAACCTATAAGAGTGTCAAGTGATGCCGTTTGCACGGTGTTGAAGCCTAGTGCAGATAAAACAATTAAGTACGAGACTGTACCCTTAAATTCAATTAAAGTGATAGTTGTTAAGGACGTACCCCAGGAGCAGTCAGATAAATTAAGGTATAgtccatttaaagaaatatataattcGGAATTAAGCGATCAAGAAAGCGTAGAAGAATATCAttcgaaatatgaagatattattaattgtagaaCGTGCCTTGATGAAATAAGACCGGAAAGAGGCTTTCAAATCACAGGTGTACACCATGAGAATAAAACCTTGCAAGAAATGATTGTTTACTGTATTCCTCAAATGGCCTCAACACTTCTTGACACTGATCTAGTCTGCAGTAAGTGCCTGGAGAGCATAAAATTCTGTATGAATTTCATAGAAAATTGCTTGAAAGTGGAAGCAGAATTACTGGAAAATCATGTTACTGCAAATATAAACGaaaataatatcGATGACTCGTATGAAGAGGTATCAGAAATGTACCGACATATTTCGTTGGATCACAACTATGTTCCGGAAATTGAGACTTTGGAGGACGATGTTCAGGAAACTATAGACTCCAAAATAATATACGATCCATCAACTGTAAAACACGAGTGTCTCCAATGTGACAGGACATTCAAAACTAAAAACTACTTACTTGATCACATACGGAGGCTGCACAGTGCCGGTGATAAATctgagaagaaaaaaaaatcttgtgtgtttaattgtcatttttgtgaTAAATCATTTTTGACCAAGTTGGGGTATGACTTGCATTTACAGCTTAGCCATCGCGATCAGGTAGAGAAAAAGAAGGAATCTGATGGCTATATATGTAAGCAGTGCGGAGGTCGGTTTGCGACATTAGGAAACCTCACAGAGCATAAGTTGGAAGAGCACGGTATTACTTGCAAGATTTGTTCTGAGAGGTTCGACACGATGAAAGAATTGAACGATCATTACAGCACCCATCCAAATGAGCACTTGTGCGACGTATGCGGCAAAGGCTTCAAAAAGAAGACCAACTTGAAGGCTCACATGCTCACCCACAACGATCCAAACACGCATCTTTGCCACAAGTGCGGACAGGGCTTCAAGTCGCACGGGTCTTTGACGCTCCACCTTAAGCACCACAACCCCGACTTGAAGTTTCAATGTGACCAGTGCCCTTCATCTTTCCAACAGAGGAACAGGCTGGACCTGCACAAGAAGGTGCTGCACTTAGGAGTCTGGGAGTATAAGTGTACCGTTTGCAACAAGAAGTTTTGCTACAAGGCCAACTTAAAGAGCCACTACAAATTGAAACATTCTGAAGTAAAGCCGTATCAGTGCGAACAATGTGGAGTTCGCTTTGCCAGGTCGGATTATCTAAAGAGGCACACGAACTGCAATGATAAGTCGGAAGGCAGATGTTTCATATCACACAAGAGGAAATATCGATACAAGAGGGGAGATCCAGCTTTAATTACGTGCAAACTATGCTATAAGGTGTTTAAGGACGTCCAAATGTTGCGGTTGCACATAAAGACTCACACGAAACTAAGAAAGTATAAATGTACGACGTGCAACTTGACATTTACAACAAGTAGTAATAGACAAAGGCACGAAAAGGTTCACGACGACTCGTCATTCAGGTGCGAAGTTTGCTTCAAAAAGATGGACAGCCTGGAGGTTTTGAACGAGCATCGCACCCTGACGCATGAGaattccaaaaaatacaaatgtcACGTCTGCCAAGagttgttttgtagaaaatacctGCTGCATAGTCATGTGGCGGAGCAACACGGAGATGTAGAGGATTTCCAGAAAGAGGGGGAGGTTCTCTATAAAGTAGTCATGCAGGACTATTTAATTGATGAGTAA
- Protein Sequence
- MCTVIINIFSSTSCRCFVPGCPNSEENATNATFHKFPEQLQDEWLIAIGRSRDNFIIDELVCSEHFEISDYEDYDSLKILKTNALPTLNLPTEPEECSVMLNAEVNTSSCEQIQQLVQKYNSLEKSKPIRVSSDAVCTVLKPSADKTIKYETVPLNSIKVIVVKDVPQEQSDKLRYSPFKEIYNSELSDQESVEEYHSKYEDIINCRTCLDEIRPERGFQITGVHHENKTLQEMIVYCIPQMASTLLDTDLVCSKCLESIKFCMNFIENCLKVEAELLENHVTANINENNIDDSYEEVSEMYRHISLDHNYVPEIETLEDDVQETIDSKIIYDPSTVKHECLQCDRTFKTKNYLLDHIRRLHSAGDKSEKKKKSCVFNCHFCDKSFLTKLGYDLHLQLSHRDQVEKKKESDGYICKQCGGRFATLGNLTEHKLEEHGITCKICSERFDTMKELNDHYSTHPNEHLCDVCGKGFKKKTNLKAHMLTHNDPNTHLCHKCGQGFKSHGSLTLHLKHHNPDLKFQCDQCPSSFQQRNRLDLHKKVLHLGVWEYKCTVCNKKFCYKANLKSHYKLKHSEVKPYQCEQCGVRFARSDYLKRHTNCNDKSEGRCFISHKRKYRYKRGDPALITCKLCYKVFKDVQMLRLHIKTHTKLRKYKCTTCNLTFTTSSNRQRHEKVHDDSSFRCEVCFKKMDSLEVLNEHRTLTHENSKKYKCHVCQELFCRKYLLHSHVAEQHGDVEDFQKEGEVLYKVVMQDYLIDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -