Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:39097078-39103772[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.033 2.4 10.3 1.9 1 23 290 312 290 312 0.99

2 14 0.96 69 5.6 1.6 1 23 321 344 321 344 0.94

3 14 9.6 7e+02 2.5 0.4 5 20 373 388 372 390 0.91

4 14 0.013 0.93 11.5 3.0 2 23 396 417 395 417 0.97

5 14 0.00086 0.062 15.2 4.5 1 23 426 448 426 448 0.99

6 14 0.023 1.7 10.7 2.1 1 23 457 479 457 479 0.98

7 14 0.0019 0.14 14.1 0.4 1 23 488 510 488 510 0.97

8 14 0.00029 0.021 16.7 0.3 1 23 519 541 519 541 0.98

9 14 5.2e-05 0.0038 19.1 0.5 1 23 550 572 550 572 0.98

10 14 0.0011 0.077 14.9 2.1 1 23 581 603 581 603 0.98

11 14 7.6e-05 0.0055 18.5 0.9 1 23 612 634 612 634 0.98

12 14 0.00082 0.059 15.3 0.6 1 23 643 665 643 665 0.98

13 14 4.9e-06 0.00036 22.3 1.4 1 23 674 696 674 696 0.98

14 14 0.00015 0.011 17.6 0.4 1 23 705 727 705 727 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.033	2.4	10.3	1.9	1	23	290	312	290	312	0.99
2	14	0.96	69	5.6	1.6	1	23	321	344	321	344	0.94
3	14	9.6	7e+02	2.5	0.4	5	20	373	388	372	390	0.91
4	14	0.013	0.93	11.5	3.0	2	23	396	417	395	417	0.97
5	14	0.00086	0.062	15.2	4.5	1	23	426	448	426	448	0.99
6	14	0.023	1.7	10.7	2.1	1	23	457	479	457	479	0.98
7	14	0.0019	0.14	14.1	0.4	1	23	488	510	488	510	0.97
8	14	0.00029	0.021	16.7	0.3	1	23	519	541	519	541	0.98
9	14	5.2e-05	0.0038	19.1	0.5	1	23	550	572	550	572	0.98
10	14	0.0011	0.077	14.9	2.1	1	23	581	603	581	603	0.98
11	14	7.6e-05	0.0055	18.5	0.9	1	23	612	634	612	634	0.98
12	14	0.00082	0.059	15.3	0.6	1	23	643	665	643	665	0.98
13	14	4.9e-06	0.00036	22.3	1.4	1	23	674	696	674	696	0.98
14	14	0.00015	0.011	17.6	0.4	1	23	705	727	705	727	0.98

Sequence Information

Coding Sequence: ATGGAGAATTTTGAGGATCAGTATTGTGCGCTTTGCCGTAGTGTCGTAAGCCATGGAAATTTTAAAGAGATTCAAAACATTACGAaggatatttttgaaattcttttGCTGAAACTAgatTTTACTGACGGAACTAACCACGTAATGTGTAATATTTGTTCGATAAAGGTAACGGAAGCATTCAAATTTAAGTCCATGTGTATCTATACTGATAACACGATAATTCCTTTTGTCGATGATGAAGCAGAATTTTTAGTAgatttaagagaaatttatgCAGAGGAAAATGGAATAGACCCATTGGataatcataaaatttgtaGGTTATGCATGCAGCTGATAAGGGGAAAATATGTTTGGATGCAGGAAGTAAATGTTGATGTGTTCGAGACATATATTCCAGAAATAAATTTGAATGTCGTCCAGGAACCTGTTCTTTGCAGTCGATGTTTCAATTCCCTTTGTACCCacagaaattttataaagaccTGCGTTAAAgtagaaaaggtaaacaatatatgTGGCACTGCTTCTAGTACTGGGCATTGTGAGCTCTCAGTAGTTCCCAACATTCAAACCGATATTCAAATTAAAGCTGAACCACGCGCACAAGAAGATTTGAGTGAAACCGAGtctattgtaataaaatctgaatATGAAGATATGCTAattgaaaacaaatatattgatataaaaCCAGAAAGTGATATAACTGACTGTAAATTGGGATGCGAAGATGAATCTGAAGTAAAGGAAACCAAATGTAAGcctaagaataatattttgaaacacaATGCGTTGACGGTAATGGCAAACCCATTTAAAGATCACCAAATTGTACAAGAAGATTCGTCCAAATTGAAAATGTACCAATGTGAAATATGTGCTTACCAAACCAAGAAAGAGAGTTACTTTTCAAACCACCAGTTGAAGCATAAAAGTTGTTCCGAAGGGAACATGTTTAATTGTATGTATTGTGAATATGAgacaaaatttaagaaagctGTGCAGAGACATTTTTTAGTTAGTCACAGAATAAAGTTACTCGACCCCAAGGAGGCTccaaaaataacagaaatgctGAACCTCAAAGATCCGCTGCCTGCGAATATATATAAATGCACTTACAGCGCCATTAACAAGTCAAATTTTTTGAGCCATCAATCGCATAAGAAGCCGCCCCTCAAATGTGACAAATGTAATTACACCACTAGGTTAAAGTTTTCCTTCACGAAGCATCAATTGGTGCACAAGAACTCCTCAGAGGTAGAAATGTACAAGTGCCACAACTGCAGTTTTGAAACTAAGTATAAGAGTAATCTTGCACAGCATCAATTAACTCACAAAGAAATTTCAGAAGTGCCAATGTACAAATGCAACAATTGTGACTATGCAGCCAAGCAAAAAGGCAGCCTTAAGTGCCACCAGTTAGTTCATAAAGACgctttagaaattaaaatgtacaaatgcGATGTCTGTGAATATGCTGCCAAGCGAAAGCTCAGCCTTAAGCGCCATTTATTAGCTCATAAAAACCCTTCAGAAGTTACAATGTACAAATGCAACGTCTGTGAATATGCCGCCAAGCGAAAGCTCAACCTTGAGCGCCATTTGTTAGTTCATAAAAACCCTTCAGAAGTTACAATGTACAAATGCGACATCTGCGACTATGCAGCCAAGCAGAAGTACCAACTTAAGCGCCACGAGTTAGTTCATAAAGACGCTTCAGAAGTGACAATGTACAAATGCAGTATCTGTGACTATGCAGCCATGCACAAGTACGAGTTTAAGCGCCACCAGTTAGTTCACAAAGACGCTTCAGAAATGAAAACATACAAATGTGACATTTGCAACTATGTAACAAAACGAAAGGACTATCTTGACACCCACCAGTTAGTTCATAAAGACGCTTCAGAAGTTACAATGTATAAATGCAACGTCTGTGAATATGCCGCCAAGCGAAAGCTCACCCTTAAGCGCCATTTGTTAGTTCATAAAGACCCTTCAGAAGTTACAATGTACAAATGCAGTATCTGTGACTATGCATCCAAGCGAAAACGCAACCTTAAGCGTCACCTGTTAGTTCACAAAGCTGCTTCAGAAGTGACAATGTACAAATGCGACGTTTGCGATTATGCCGGCAAGCAAAAGGTCTACCTTAAGAAACACTTGTTAGTTCACAAAGGCGCTTCAGACGTAACAATGTCCAAATGCCACAAGTGA
Protein Sequence: MENFEDQYCALCRSVVSHGNFKEIQNITKDIFEILLLKLDFTDGTNHVMCNICSIKVTEAFKFKSMCIYTDNTIIPFVDDEAEFLVDLREIYAEENGIDPLDNHKICRLCMQLIRGKYVWMQEVNVDVFETYIPEINLNVVQEPVLCSRCFNSLCTHRNFIKTCVKVEKVNNICGTASSTGHCELSVVPNIQTDIQIKAEPRAQEDLSETESIVIKSEYEDMLIENKYIDIKPESDITDCKLGCEDESEVKETKCKPKNNILKHNALTVMANPFKDHQIVQEDSSKLKMYQCEICAYQTKKESYFSNHQLKHKSCSEGNMFNCMYCEYETKFKKAVQRHFLVSHRIKLLDPKEAPKITEMLNLKDPLPANIYKCTYSAINKSNFLSHQSHKKPPLKCDKCNYTTRLKFSFTKHQLVHKNSSEVEMYKCHNCSFETKYKSNLAQHQLTHKEISEVPMYKCNNCDYAAKQKGSLKCHQLVHKDALEIKMYKCDVCEYAAKRKLSLKRHLLAHKNPSEVTMYKCNVCEYAAKRKLNLERHLLVHKNPSEVTMYKCDICDYAAKQKYQLKRHELVHKDASEVTMYKCSICDYAAMHKYEFKRHQLVHKDASEMKTYKCDICNYVTKRKDYLDTHQLVHKDASEVTMYKCNVCEYAAKRKLTLKRHLLVHKDPSEVTMYKCSICDYASKRKRNLKRHLLVHKAASEVTMYKCDVCDYAGKQKVYLKKHLLVHKGASDVTMSKCHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -