Malt042427.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:39668135-39676536[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.4e-05 0.0017 20.1 0.5 1 23 241 263 241 263 0.98
2 16 0.26 19 7.4 5.8 1 23 272 294 272 294 0.98
3 16 0.0025 0.18 13.8 1.7 1 23 303 325 303 325 0.99
4 16 0.0061 0.44 12.6 5.5 1 23 329 351 329 351 0.98
5 16 0.045 3.2 9.8 2.1 1 23 360 382 360 382 0.98
6 16 0.0028 0.2 13.6 1.3 1 23 389 411 389 411 0.99
7 16 0.00013 0.0091 17.9 3.4 1 23 420 442 420 442 0.98
8 16 0.0029 0.21 13.6 3.4 1 23 451 473 451 473 0.99
9 16 0.07 5.1 9.2 5.2 1 23 483 505 483 505 0.98
10 16 0.015 1.1 11.3 4.8 1 23 514 536 514 536 0.98
11 16 0.0064 0.46 12.5 1.7 1 23 545 567 545 567 0.97
12 16 0.0059 0.42 12.6 1.1 2 23 575 596 574 596 0.96
13 16 0.0017 0.13 14.3 5.1 1 23 605 627 605 627 0.99
14 16 0.0031 0.23 13.5 4.5 1 23 636 659 636 659 0.96
15 16 0.0024 0.17 13.9 1.0 1 23 668 690 668 690 0.98
16 16 0.0018 0.13 14.2 5.0 1 23 697 719 697 719 0.98

Sequence Information

Coding Sequence
atggccaaatttaaaaaattattctgcAAGCTTTGTTCGAACACCATCACGGATggaaattttaaagtaattgaTGAAACTATTAGGGAAGTGCTAGAcgtttttcagataaaaatgAATGTGGATGAACATAGTACATTTGTTATGTGCGATGCCTGTTCCAAAAAACTATTCGCTGCTTTTCATTTCAAAGCAACTTGTATGGACAACGAGGACAGTATTTTTCCTTACGTTAATTCGGAGAATGTGGAACTGGTGGATTTAAAGACGATTTATCTAAAAGAGAGACATAAAGAACATTTAAGCGCTTTGTTGGTCGATGAGAAAATTTGCCGATTGTGTATGCAAATAATCACCTCTGGATTTTCATCAGTAAATAACGTGGAGACCGAATTAATCTATAAATGTATTCCAGAAGTTAACTTCAGTTCCACCAAAGATCCAATTATATGTTCACAATGTCTTGATTCATTGAACACTCAtggtgaatttttaaagaactgTGTAGACGGACAGGACAAAATTAAAGATATTGTAGACCAAACTACAGGAAGTAATTCGTGTATCGTCACGGAAAAGATGGAAATAAAATGTGAGGAAAACTATGAAGACAAAGAAACtGGTTTTCCATGGACTGATGAACCCAGTGTCTGTAAAACTGAGGAGAACAGTGGTCTAAAACCTCaactaaaagataaaaaatcTTCAGTTGTGCAAATGTACACGTGTGACGTCTGTGGTTTTAAAACGGCACGCAGGGCAAATTTAATTCGTCATCAGCTAAGACATAAAAGCTTTTCTGAAGTCCAGACCTACCATTGCAACATATGCAGCTTCAAATCCAAATACAAGCATAACGTTACAGAGCATATTTTAAGGCACGAAGATCCTTTACGACAACGAACATACAAGTGTGACAAATGCGACTTTGAATCCAAAAAAAGAGGTTTCCTTATAACCCATCAAAGAATACATAAAAATCCACATAAATGTAATATATGTGGTTATGAAACAATGAAAAAAACCCATTTTACACGCCATCAACTTGTACATAAAGACAGTTCCAAAGTGCAACtgtacaaatgtgatatttGTAGTTTCGAAACCAAGTACAAATACGGTTTTCTTACCCACCAGTTAAATCATAAAGACAGTGTCAAAATGTACAAATGCGATCAATGCCCCTATAAAGTTAAGTATAGATCCACCATGAACATTCATCTATTAAGACACAAAGATGTTTCTGAAATACAAATGTACACGTGTGATATTTGCCACCGTCAGTATAAAACGAAAGGCAGCCTTACAAGCCATCAGTTTGTGCACAAAGATGTTTCCGAATTGACAACATACAAATGTGACACTTGTGGCTACGAGACATGGCGTAAGAGTCATTTTATGCGCCATCAAATCACACATAGAGACTTATCTGAGGTCAAATTTGTGTACGAATGTGATTCGTGCGATTTCAAAACTAAGTTCAAGGGATGCCTTCAAAGCCATCAGAAGAAACACAAAGACCCTTCGGAAGTGCAAATGTACACATGTGATGTGTGTGATTTTCAAACCAGGCACAAGTACTCTTTCAGGTCTCATCAGTTAAATCACAAGGATGATGTCGAAGTGCCGTTATATGAATGTAGCAAGTGTGACTTCAAAACTAAGTATAAACCTAATCTAGGTAAACACCAAGAACAACACAAAACTGATCGACAGATGGTCAAATGTGCTTCATGTAATTATACAACTACCGGTAAACGTAACCTTCAACGGCATCTTCTACAACATAAAGACATTTCCGAAGTGCAAATGTACACGTGTGATTTGTGTGACTTTAAGACAAGGCATAAGAACAATCTCAAATACCATCAGTTGACTCACAAAAAGTTTTCTGAGGTGCAACtattcaaatgtaatttgtgCAACTTCGAAACCAAGCATAAAAACAATCTGAAACGCCATAAGATAATGGAGCACAAGGACTTCTCTGAAACGCAAGTATACAAATGTGACAAGTGTGATTATAAAGCCAAGCTTAAGGAACAACTAATACGTCATCTAGTAAAACACAGGGAACCTTCCCAGACGTTCAAATGCAGTGTATGTGATTTTAAAAGCAAACATGAATCCAGTCTACGGCGCCACAAACGCCTACACAAAAAgtgttaa
Protein Sequence
MAKFKKLFCKLCSNTITDGNFKVIDETIREVLDVFQIKMNVDEHSTFVMCDACSKKLFAAFHFKATCMDNEDSIFPYVNSENVELVDLKTIYLKERHKEHLSALLVDEKICRLCMQIITSGFSSVNNVETELIYKCIPEVNFSSTKDPIICSQCLDSLNTHGEFLKNCVDGQDKIKDIVDQTTGSNSCIVTEKMEIKCEENYEDKETGFPWTDEPSVCKTEENSGLKPQLKDKKSSVVQMYTCDVCGFKTARRANLIRHQLRHKSFSEVQTYHCNICSFKSKYKHNVTEHILRHEDPLRQRTYKCDKCDFESKKRGFLITHQRIHKNPHKCNICGYETMKKTHFTRHQLVHKDSSKVQLYKCDICSFETKYKYGFLTHQLNHKDSVKMYKCDQCPYKVKYRSTMNIHLLRHKDVSEIQMYTCDICHRQYKTKGSLTSHQFVHKDVSELTTYKCDTCGYETWRKSHFMRHQITHRDLSEVKFVYECDSCDFKTKFKGCLQSHQKKHKDPSEVQMYTCDVCDFQTRHKYSFRSHQLNHKDDVEVPLYECSKCDFKTKYKPNLGKHQEQHKTDRQMVKCASCNYTTTGKRNLQRHLLQHKDISEVQMYTCDLCDFKTRHKNNLKYHQLTHKKFSEVQLFKCNLCNFETKHKNNLKRHKIMEHKDFSETQVYKCDKCDYKAKLKEQLIRHLVKHREPSQTFKCSVCDFKSKHESSLRRHKRLHKKC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-