Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073431.1:40024312-40033689[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0077 0.56 12.2 0.6 2 23 195 217 194 217 0.95

2 9 0.00048 0.035 16.0 0.4 1 23 223 245 223 245 0.96

3 9 8.6e-06 0.00062 21.5 2.0 1 23 279 301 279 301 0.96

4 9 2.7e-06 0.00019 23.1 0.5 1 23 310 332 310 332 0.99

5 9 2.5e-07 1.8e-05 26.4 0.5 1 23 338 360 338 360 0.99

6 9 1.8e-05 0.0013 20.5 0.9 1 23 366 388 366 388 0.95

7 9 9.2e-05 0.0067 18.3 3.3 1 23 394 416 394 416 0.98

8 9 0.00019 0.014 17.3 5.1 1 23 422 444 422 444 0.98

9 9 9.4e-05 0.0068 18.3 6.2 1 23 450 473 450 473 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0077	0.56	12.2	0.6	2	23	195	217	194	217	0.95
2	9	0.00048	0.035	16.0	0.4	1	23	223	245	223	245	0.96
3	9	8.6e-06	0.00062	21.5	2.0	1	23	279	301	279	301	0.96
4	9	2.7e-06	0.00019	23.1	0.5	1	23	310	332	310	332	0.99
5	9	2.5e-07	1.8e-05	26.4	0.5	1	23	338	360	338	360	0.99
6	9	1.8e-05	0.0013	20.5	0.9	1	23	366	388	366	388	0.95
7	9	9.2e-05	0.0067	18.3	3.3	1	23	394	416	394	416	0.98
8	9	0.00019	0.014	17.3	5.1	1	23	422	444	422	444	0.98
9	9	9.4e-05	0.0068	18.3	6.2	1	23	450	473	450	473	0.98

Sequence Information

Coding Sequence: atgGAGACAAGGTGCCGTCTTTGTGCAGAATCTTCTTCAAATCAGTTACCTATTCTACATGATTTAGAAtttcgtttaaaaatatttcaattatttcaaattaaggtTTCAGTAGAAGACAATTTACCTTCATCAGTATGTCAGATTTGTTATGATATGGTAGGAAAAACATGGGAATTCAATGATCGTATCCAAAAAGCACAAGCTCTTTTAAATGATTTAGTAAGTAATAACAGTACAATTTTGTCTCCAGCAGAACCAGTACAGCCGCAAACAGTGTTAGATACtcaaatattaaatacacagaaTGAAGTAGCAGAGCTTAATTACATAGATACGAAACCTAcggtaaaatgtgattttaatATACCTGACACAGTTAATGACTTATCTGATAGTTCAGAGAAATCAGAACATAGACGTAAAACcttaagaacaaaaaataagatacgaaaatcttcaaaaaagaaaactatgaaattatttgaatctaTTGATTTAGAAGATACAGAATTTGACTTGAATGATGATGGAAGTATAATACCAAAAAATGAGTTACTTGGATGGGATACATATCCCTGGACTTGCTGTGACTGCCAAGTAACTTTTGCTTTACCAGACGATCTTAAAGAACATTATTCATCAACTCATAATTCTACAAGTCGTTATCTTTGTGCAGATTGTTCCAAAGTATACTCAAAATATAGTACTTTCTTAGCGCATGTTAGAGTTCATCGTATGAAATTACGGTTTTGTTGTGATGTGTGCTACAGATGGTTTCCAACAGTTGCGGCCCAGGAACAACATCGATCTCATCATGGAGATGATAGACCTCACGCTTGTAATACTTGTGGAAAAAGATTTAGAATGCAGTCAGCTTTAATGgtACATACTCGGTCTCATTTACCTgctgaattaaaaaatagatatcAGTGTGACCAGTGTCCCAAGAAATTTGGAACTAAACCGAATCTTATGGCTCATAAAAGAATTCATACTGGAATCAGGGACTACACTTGTGATCAGTGTGGTAAAAGTTTTGTTCAGAAAGGAAATCTTGATAATCACTTATTGACACATACAGCCGCAAGACCATTTAACTGTAATATATGTGGGAAGTCTTTTAAAACTTTGGTGAGATTACGGAAACATGGTTCTGTCCATTCTGGCTTAAAACCACACCAGTGTGATGTATGCGGGAGACAATTTAGAGAACGAGGTACCTTAAAAGAACATCACAGGATTCATACTGGTGCTATGCCTTTTACCTGTGAGTTTTGTGGTAAATGTTTTCGGTTTAAGGGAGTTCTTACAACCCATCGAAGGCAACATACAGGTGAAAGACCTTACTCTTGCAATGAATGTCAACATCACTTCACCAATTGGCCAAATTACAATAAACATATGAAACGTAGACATGGTATCAATACTAGTGTAACTTGTAGGACTAAACAAGACATACCTCCTACAGGTATGCCACATCGGAATCCTCCAGGGACCGTTTTGGCTCCACCACAGCCTGTCGTTATTCCAGAAAATTTTGTTGAACCTCCAGCAACATTCTACCCAGTATTAAGTTTATATAATATTCCTGAGGAACTTTTACAACAAAGAGtctga
Protein Sequence: METRCRLCAESSSNQLPILHDLEFRLKIFQLFQIKVSVEDNLPSSVCQICYDMVGKTWEFNDRIQKAQALLNDLVSNNSTILSPAEPVQPQTVLDTQILNTQNEVAELNYIDTKPTVKCDFNIPDTVNDLSDSSEKSEHRRKTLRTKNKIRKSSKKKTMKLFESIDLEDTEFDLNDDGSIIPKNELLGWDTYPWTCCDCQVTFALPDDLKEHYSSTHNSTSRYLCADCSKVYSKYSTFLAHVRVHRMKLRFCCDVCYRWFPTVAAQEQHRSHHGDDRPHACNTCGKRFRMQSALMVHTRSHLPAELKNRYQCDQCPKKFGTKPNLMAHKRIHTGIRDYTCDQCGKSFVQKGNLDNHLLTHTAARPFNCNICGKSFKTLVRLRKHGSVHSGLKPHQCDVCGRQFRERGTLKEHHRIHTGAMPFTCEFCGKCFRFKGVLTTHRRQHTGERPYSCNECQHHFTNWPNYNKHMKRRHGINTSVTCRTKQDIPPTGMPHRNPPGTVLAPPQPVVIPENFVEPPATFYPVLSLYNIPEELLQQRV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -