Malt042404.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:39469402-39489234[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0021 0.15 14.0 1.5 1 23 320 342 320 342 0.99
2 20 0.012 0.86 11.6 2.7 1 23 351 373 351 373 0.99
3 20 0.071 5.1 9.2 4.8 2 23 383 404 382 404 0.98
4 20 0.0046 0.33 13.0 0.7 1 23 413 435 413 435 0.98
5 20 0.0093 0.67 12.0 6.2 1 23 444 466 444 466 0.99
6 20 0.011 0.82 11.7 2.7 1 23 475 497 475 497 0.98
7 20 0.79 57 5.9 5.2 1 23 506 528 506 528 0.99
8 20 0.00075 0.055 15.4 0.4 1 23 537 559 537 559 0.99
9 20 0.00026 0.019 16.9 1.1 1 23 875 897 875 897 0.99
10 20 6.3e-05 0.0045 18.8 3.4 1 23 906 928 906 928 0.99
11 20 0.0044 0.32 13.0 3.9 2 23 938 959 937 959 0.98
12 20 0.0036 0.26 13.3 1.2 1 23 968 990 968 990 0.98
13 20 0.0079 0.57 12.2 3.1 1 23 999 1021 999 1021 0.99
14 20 0.24 17 7.5 5.5 1 23 1030 1052 1030 1052 0.98
15 20 0.00038 0.027 16.4 0.6 1 23 1061 1083 1061 1083 0.99
16 20 0.034 2.5 10.2 5.5 1 23 1092 1114 1092 1114 0.99
17 20 0.0098 0.71 11.9 0.2 1 23 1123 1145 1123 1145 0.97
18 20 1 76 5.5 2.9 1 23 1153 1175 1153 1175 0.96
19 20 0.0082 0.6 12.1 2.5 1 23 1184 1206 1184 1206 0.98
20 20 0.027 1.9 10.5 5.2 1 23 1215 1237 1215 1237 0.99

Sequence Information

Coding Sequence
ATGCAGCGAGAAATTTTGAACACAGAGCTGTGCTGCAGACTGTGCCTTCATGTCACAACGTATAAAAATTCCAAAGTAATAGAGAAAGATGCGCTAAAGGCTCTCCAAGTTATTTTGCCTTCTCTGAACTTGGAAGAGGAACAGAAACACTTTATATGTGACGCATGCAACTCAAAATTGTTTgctgcttttaattttaaatcggCATGTATGGATACAGAGGATATTATTTCTCCACATGTCGGTACCGATAAAATATCGGTGATTGAATTAAAAgacatttatttaaagataaataGAAATATTCTCTTAACTGATATGTCAGAAAATCAAAGAATTTGCAGATTGTGTTTGCAACTGATAACATGCGAATTTGTGCCCCTAAATGAAGTGGATAATGGCATAATTGATACATATATACCTAAAGTAaacatCAATGCTTCCAGAGATCCTGTTATATGCCGGCCATGTTTTAATTCTCTTCACATTCATGGCGATTTTTTGAAGAGCTGTCGTACAGCACTTGAAGAATGCAAAGGTGCCAATAAACAACCGTATATAAAATCTGAAGAGATTGAAATCAAAGTGGAAGATTGTCCTAATGATAAGCATGAAGAATACAAAGGTGCAGATAAACCACCATATATAAAAACTGAAGACATTGAAATCAAAATGGAAGAGTGTTATGATGCACAGCTGGAATATGAAAACATCGATAAGCCGTCTTATGTTACATCCGAggacattgaaataaaaacagaacACGGAGATCAGGACAAtttctctTCACACAACTTAGATGGGGAAACAACTGAAAACAATAAGCATATTTCTGAAGACAAAGAAGAAACAGATGAGGAATATATGCTTGAATGTGAGAGCAAACTTCAAATAAACAAATGTGAAACTTTGTTAAATGATTCATCATATAAAAATAGATATGAAAaaatccgaatgtacaagtgtgatgcATGCAATTATGAAACTAAAAGTAAAGTTCTGCTGAAACGTCATCAATTAAGGCATAAAGATCCATCTGAAGTCCAAATATACAAATGTGACGCATGTGATTATGAGAGTAAAGTTAAGTGTGATTTGAAAAGACATcaattaacacacaaagacccttctgaaataCAAATGAACAAATGTAATAACTGCAATTTTGAATCTAAATATAAGAGTTGCctgaaaattcatcagttaaCACACAAAAATCCTTCTGAtatccaaatgtacaagtgtgatgtGTGTGACTTTGGAAGCAAACGCAAGGATGTGCTGAAAAGTCATCAGCTATtgcacaaagacccttctgaagttcaaatgtacaaatgtaacaaatGTACTTACGAATGTAAATATAAGAGATTACTGAACTCTCATCAGTTAACACACAAAGATCCTTctgaaatacaaaaatacaagTGTGATGCATGCGATTATGAATGCAAACGCAAGTCTATTCTGAAACGTCATCAGTTAGTGCACAAATacccttctgaaatccaaatgtacaaatgtaatAGTTGTAATTTCGAAAGCAAATATAAGAATTGCCTGAAAGGTCATCAGttaacacacaaagacccttctgaaatccaaatgtacaaatgtgatgcaTGTGATTACGTAGCTAAACGTAAGGGTACTCTAAAAATTCATCAGTTGACACACGAAGACCCTTCTGAAGTCCAAATGTACAAGTGCAATTTATGTGGTTATGAAACTAAATTGTGCCTTAATATCACAAGCTATACAAATTTGGAAGTAATAGGAAAAGATACACTAAACGCTTTAGTGTATCTTTTGCCGACTCTGaaCTTGGAAGAGAGACCTGAACACCTGATGTGTAAAGCATGCAGATCAAAATTATTTgctgcttttaattttaaatcggCATGTATGGATACCGATGATATTATTTCTCCTCATGTCATTACCGATAATGTTTCGATGATTGAATTAAAAGACgtttatttaaagatgaatgGAAATATTCAGTTGACTGATTTGTGGGAAAATCAGAGAATTTGCCGATTGTGTTTTCAACTGGTAATATGCGGATTTGTGTCACTAAATGAAGTGGATAATGACATAATTGATACATATATACCTCAATTAAACATTAAAGCTACCAAGGACCTCGTTATATGCCAACCATGTTATAACTCTCTTTGTACCCATGGCGGTTTTCTAAAGAACTGCCGTACAGCACATGAAGAATACAATGGTACCGAAAAACAACCTTATATAAAAACTGAAAAGATTGAAATCAAACTGGAAGATTGTCATGATGAGCAGCAAGGATATGAAAATATTGATAACCAATATTATATTACATCTGAGATTGACATAAAGACAGATGACAAAGATCAGGACAAtgaTTCCACTTCACACAATTTAGATGCGAAaactattgaaaacaaaaagtttATTTCTGAAGGCAAAGAAGAAACAGATGACGACTATATGCTCAAATGTGACAGCAAagttcaaataaacaaatacgaGACTTTGTTAGATGTATCATCACACaagaataaatatgaaagagaGTTTGGAGATGATACGAAACACAGAATTGttccaaaaacaaagttttCTTCAGAAATCCGAATATACAAATGTGATGTATGTGAATATGAATCTAAAACTAAGGCTTTGCTGAAACGTCACCAATTAAGACACAAAGACCCATCTGAAGTTCAAATGTACAGATGTCATACGTGTGATTATGGAACTAAACGTAAGGGTGAGTTGAAACGTCATCTACTAACACATAAGCAgccttctgaaatccaaatgaaaaaatgtaacatctgtaattttgaaactaaataCAGCAGTTGCCTGAAAGTCCATATGTTAACACACAAAAATTCTTCTGAAATCCAAATATACAAGTGTGATGTGTGTGACTTTGGAAGCAAACGCAAGGATAGGTTGAAAAGTCATCAGTTATTGCACAAAGATCCTTCTGAAgtccaaatgtacaaatgtaacaaatGTACTTACGAAAGTAGATATAAGAGATTACTAAACTTACATCAGTTAACACACAAACACCCTTCGGAAGTCCTAATGTACAGGTGTGATGCATGTAGCTACGAAACTAAACACAAGCATAAGCTGAAAAGTCATCAATTAATACACAAAGGTCCTTCTGAAATCccaatgtacaaatgtgatgcaTGCGATTATGAAACCAAACGCAAGGGCGAGCTGATACGTCATCGTTTAACACACAAACAtccttctgaaatccaaatgtacaaatgcAATAATTGTAATTTCGAAACTAAATATAACAAGTGCCTGAGAGTTCATCAGTTAACGCACAAAAGCCCTTTTGAAATCCAAATATACCAGTGTGGTGTGTGTGATTTTGAAAGCAAATCCGAGGATATGCTGAAAAGCCATCAGATATTGCACGACGTCTCTTCTgttcaaatgtacaaatgtattAACTGTAATTTCAAAAGTAAGTATAAGAGGAGTCTGAAAGTTCATCAGCTATTGCACAAAGACCCTTCGGAAgttcaaatgtacaaatgtaacaaatGTAATTACGAAAGTAGATATAAGAGAAACGTGATAAATCATCAATTGtcacacaaagacccttctgaaatccGAATGTACAAATGTAGTAATTGTAATTATGAATCTAAATATAAGAACTGCCTGAAAGTTCATCAGTTAACACACGAAGACCCGTCTGAAATCCAACTGTACAAATGTGAAAACTTGTGTTAA
Protein Sequence
MQREILNTELCCRLCLHVTTYKNSKVIEKDALKALQVILPSLNLEEEQKHFICDACNSKLFAAFNFKSACMDTEDIISPHVGTDKISVIELKDIYLKINRNILLTDMSENQRICRLCLQLITCEFVPLNEVDNGIIDTYIPKVNINASRDPVICRPCFNSLHIHGDFLKSCRTALEECKGANKQPYIKSEEIEIKVEDCPNDKHEEYKGADKPPYIKTEDIEIKMEECYDAQLEYENIDKPSYVTSEDIEIKTEHGDQDNFSSHNLDGETTENNKHISEDKEETDEEYMLECESKLQINKCETLLNDSSYKNRYEKIRMYKCDACNYETKSKVLLKRHQLRHKDPSEVQIYKCDACDYESKVKCDLKRHQLTHKDPSEIQMNKCNNCNFESKYKSCLKIHQLTHKNPSDIQMYKCDVCDFGSKRKDVLKSHQLLHKDPSEVQMYKCNKCTYECKYKRLLNSHQLTHKDPSEIQKYKCDACDYECKRKSILKRHQLVHKYPSEIQMYKCNSCNFESKYKNCLKGHQLTHKDPSEIQMYKCDACDYVAKRKGTLKIHQLTHEDPSEVQMYKCNLCGYETKLCLNITSYTNLEVIGKDTLNALVYLLPTLNLEERPEHLMCKACRSKLFAAFNFKSACMDTDDIISPHVITDNVSMIELKDVYLKMNGNIQLTDLWENQRICRLCFQLVICGFVSLNEVDNDIIDTYIPQLNIKATKDLVICQPCYNSLCTHGGFLKNCRTAHEEYNGTEKQPYIKTEKIEIKLEDCHDEQQGYENIDNQYYITSEIDIKTDDKDQDNDSTSHNLDAKTIENKKFISEGKEETDDDYMLKCDSKVQINKYETLLDVSSHKNKYEREFGDDTKHRIVPKTKFSSEIRIYKCDVCEYESKTKALLKRHQLRHKDPSEVQMYRCHTCDYGTKRKGELKRHLLTHKQPSEIQMKKCNICNFETKYSSCLKVHMLTHKNSSEIQIYKCDVCDFGSKRKDRLKSHQLLHKDPSEVQMYKCNKCTYESRYKRLLNLHQLTHKHPSEVLMYRCDACSYETKHKHKLKSHQLIHKGPSEIPMYKCDACDYETKRKGELIRHRLTHKHPSEIQMYKCNNCNFETKYNKCLRVHQLTHKSPFEIQIYQCGVCDFESKSEDMLKSHQILHDVSSVQMYKCINCNFKSKYKRSLKVHQLLHKDPSEVQMYKCNKCNYESRYKRNVINHQLSHKDPSEIRMYKCSNCNYESKYKNCLKVHQLTHEDPSEIQLYKCENLC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-