Malt042249.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:38136327-38141347[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3e-05 0.00094 21.0 0.2 1 23 271 293 271 293 0.98 2 11 2.8e-05 0.002 19.9 1.2 1 23 302 324 302 324 0.98 3 11 2.2e-05 0.0016 20.2 0.2 1 23 333 355 333 355 0.98 4 11 3.8e-05 0.0027 19.5 1.6 1 23 364 386 364 386 0.98 5 11 5.7e-05 0.0041 18.9 0.5 1 23 395 417 395 417 0.97 6 11 0.0051 0.37 12.8 4.3 1 23 426 448 426 448 0.98 7 11 0.0002 0.014 17.2 0.4 1 23 457 479 457 479 0.98 8 11 1.5e-05 0.0011 20.7 0.5 1 23 488 510 488 510 0.98 9 11 0.00075 0.055 15.4 0.8 1 23 519 541 519 541 0.98 10 11 2.2e-05 0.0016 20.3 0.3 1 23 550 572 550 572 0.98 11 11 1.6 1.2e+02 4.9 0.0 11 23 590 602 588 602 0.92
Sequence Information
- Coding Sequence
- ATGGAGAATTTTGAGGAACAGTATTGCGCGCTTTGCCATAGTGCCGTAAGCCAtggaaattttaacaaaattcaaaatattacgaagGATACTTTTGAAATTCTTTTGCTGAAATTAAACTTTGCTGACGGAACTAACCacgtaatttgtaatatttgttcGGTAAAGTTAACCGAAGCATTCAAATTTAAGTCCATGTGTCTCTCTTCCAATAACAAGATAATTCCTTACGTCCATGATGAAACACAATGTTCAGTAgatttaagaaaaatgtatgcagaGGAAAAAGGAATAGACCCATTGGATAATCATAAAGTTTGTAGGTTATGCATGCAGCTGATAAGAGGAGAATTTGTGTCGATGCAGGAAGTAAATGTTGATGTGTTCGAAAAGTATATTCCAGAAATAAATTTGAGTGTCGTCCAGAAGCCCGTTTTTTGCAGTCGATGCTTCGATTCCCTATGTACCCACAGCAATTTCATAAAAACCTGggttaaagtagaaaagataaacaATATACGTGGCACTGCTTCTAATGCTGGATTTTGTGAGCTATCAGTAGTCCCGAACATTAAAACCGAGATTCAAATTAAAGTTGAACCAAGCGCACAAGAAGATAATTTGAGTGAAACTGAGTCTATTGTAGTAAAATCTGAATATGAAGATATACTAATTAAAAGCGAATGTATTAATATAAAACCAGAAAGTGATATAACTGACTGTAAATTGGGACTCGGAGGTGATCAAATGCAAAAATCCAGTCTTAAGATCCACCAGTTAGGCCACAAAGAAGTTTCACAAGTGCCAATGTACACGTGTGACATCTGCGAGTATGCAGCCAAGGACAAGAGCAACCTTAAGCGCCACTTGTTAGTTCATAAAGACGCTTCAGAAGTgacaatgtacaaatgtgacatCTGCGACTATGCAGCCAAGCAGAAGTACCAACTTAAGCGCCACCAGTTTGTTCACAAAGATGCTTCAGAAGTGACAATGTACAAGTGCAATATCTGCGATATTGCAGTCAAAGTCAAGTACGAACTTAAGCGCCATCAGTTAGTTCACAAAGACGCTTCAGAAGTtacaatgtacaaatgtgaaGTCTGCGACTATGCAGCCAAGCACAAGTACGAACTCAAGCGCCACCAGTTAGTTCACAAAGACGCTTCAGAAGTTGcaatgtacaaatgtgacatCTGCGAATACGCCACCAAGCGAAAGGTCAGCCTTAAGCGCCACTTGGTAGTTCACAAAGACGCTTCAGAAGTGACGATGTACAAATGCAACATCTGCGACTATGTAACCAAGCAGAAGTACAAACTTAAGTGCCACCAGTTAGTTCACAAAGATACTTCAGAAGTGAAAAAGTACAAATGTGAGATTTGCAGCTATGTAGCAAAACGAAAGGACTATCTTGAAGCCCACCAGTTTGTCCACAAAGATGCTTCAGAAGTGACAGTGTACAAATGCAGCATCTGCGACTATGCAGCCAAGCAAAAAGGCAACCTTAAGCGTCACCTGTTACTTCACAAAGACGCTTCAAAAGTGAgaatgtacaaatgtgacatTTGCAACTATGTAGCAAAACGAAAGGACTATCTAGACACCCACCAGTTTATCCACAAAGATGCTTCAGAAGTGACAATGTACAAATGCAGCATCTGTGACTATGCAGCCAAGCAAAAAGGCAGCCTTAAGCGCCACCTGTTAGTTCACAAAGACACTTCAAAAGTGAGAATGTATAATTCAACTGGGCGCTATGGAGCCAAGCAAAAAGGTAACCTTGAGCGCCATCTGTTAGTTCACAGAGACGCTTCAGAAGTGACAATGTACAAATGCAACAGGTGA
- Protein Sequence
- MENFEEQYCALCHSAVSHGNFNKIQNITKDTFEILLLKLNFADGTNHVICNICSVKLTEAFKFKSMCLSSNNKIIPYVHDETQCSVDLRKMYAEEKGIDPLDNHKVCRLCMQLIRGEFVSMQEVNVDVFEKYIPEINLSVVQKPVFCSRCFDSLCTHSNFIKTWVKVEKINNIRGTASNAGFCELSVVPNIKTEIQIKVEPSAQEDNLSETESIVVKSEYEDILIKSECINIKPESDITDCKLGLGGDQMQKSSLKIHQLGHKEVSQVPMYTCDICEYAAKDKSNLKRHLLVHKDASEVTMYKCDICDYAAKQKYQLKRHQFVHKDASEVTMYKCNICDIAVKVKYELKRHQLVHKDASEVTMYKCEVCDYAAKHKYELKRHQLVHKDASEVAMYKCDICEYATKRKVSLKRHLVVHKDASEVTMYKCNICDYVTKQKYKLKCHQLVHKDTSEVKKYKCEICSYVAKRKDYLEAHQFVHKDASEVTVYKCSICDYAAKQKGNLKRHLLLHKDASKVRMYKCDICNYVAKRKDYLDTHQFIHKDASEVTMYKCSICDYAAKQKGSLKRHLLVHKDTSKVRMYNSTGRYGAKQKGNLERHLLVHRDASEVTMYKCNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -