Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073429.1:61545015-61548958[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.018 1.3 11.1 0.1 2 20 219 237 218 239 0.92

2 10 0.15 11 8.1 1.2 1 23 253 275 253 275 0.97

3 10 0.00014 0.01 17.7 0.9 3 23 325 346 323 346 0.91

4 10 5.1 3.7e+02 3.4 0.1 1 19 407 425 407 428 0.78

5 10 9.1e-06 0.00066 21.4 1.5 2 23 458 479 457 479 0.97

6 10 1.3e-05 0.00096 20.9 1.2 1 23 485 507 485 507 0.98

7 10 5.3e-06 0.00038 22.2 2.1 1 23 513 536 513 536 0.96

8 10 2.6e-07 1.9e-05 26.3 0.7 1 23 542 564 542 564 0.99

9 10 1e-06 7.5e-05 24.4 2.1 1 23 570 592 570 592 0.99

10 10 2.5e-06 0.00018 23.2 2.6 1 23 598 620 598 620 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.018	1.3	11.1	0.1	2	20	219	237	218	239	0.92
2	10	0.15	11	8.1	1.2	1	23	253	275	253	275	0.97
3	10	0.00014	0.01	17.7	0.9	3	23	325	346	323	346	0.91
4	10	5.1	3.7e+02	3.4	0.1	1	19	407	425	407	428	0.78
5	10	9.1e-06	0.00066	21.4	1.5	2	23	458	479	457	479	0.97
6	10	1.3e-05	0.00096	20.9	1.2	1	23	485	507	485	507	0.98
7	10	5.3e-06	0.00038	22.2	2.1	1	23	513	536	513	536	0.96
8	10	2.6e-07	1.9e-05	26.3	0.7	1	23	542	564	542	564	0.99
9	10	1e-06	7.5e-05	24.4	2.1	1	23	570	592	570	592	0.99
10	10	2.5e-06	0.00018	23.2	2.6	1	23	598	620	598	620	0.97

Sequence Information

Coding Sequence: ATGGAAACTGGTAAAAATAATAGGGAATTACTGGATAATATAGTTATAGCAGATAATTCAGCCACACCCCAGTATATGATACATAGAATACCAGAAAATTCTCAACTTAGTACTGAATTATTGCAACAACACAATGGTCTTGTTGTTGACTTGGGAGGAAACGATTTTATACCGGTTAGTTATACATCGGAAGACTTATTGTCACAGGACTTGACGGAAGAAGACAGAAATTTAGCAGCAGCTTTAGTTGCTGTGCAGCTTAGTCAACAGCAAAAACAGCAACAGCTTCAAGACATTACACTTCCATCCCTTGTCACGAATTCAAATCTAGgaaataaaatattagaagaTCCTCAATTAATTATCAGCGAAAAGACTGGTAGTACAAGTTACTTACGTATCGTTAATTCTGAAAATCTATATGTCGAGCAACAGCCACTGCCTAAATTAGTAGATACTGTAAGATTCTCATCTGTGAATCCCAACTTCTCCGAAGGTGCGGTTATTTCTCCCGTAAAAAAAGAAGATGAAAAAGCCGATTCCGACAGAGAATCTCTGAGGAACGATCACCGTTCATCCAAGAAAAGTTTACCGCACAAAAAGAGAATTTCACgcaaacttaaaaaaaacactGCTGCCGCCGCCAGGAAAATAGTGTGCAACTTATGCGAACAGACGTTTAATTCTAACGATGACTTCGCCCAACACGAACTTTTATGCCAAACAACGATTACTCCCATTAACCAAGCTAGCGTCTTTTCATGCCAAATTTGCAATGAACCATTCCAAGAACAGCTTAGgtttttcgAACACTTAAAAAAGCATTATGAACCTGGAGGCACCGGTGGTAACCCTGCTCTTCCCTCCACCTCTACCCAGAAAACCGTGGAGGAACCGCAGGCAGAAAAAGTATCGGATCAAACTGAAAATGACCGGCAGGAAAGCCTGTTGTCGAGTCTGTTGAACTTATCGTGTATAGAGTGCAATAAAACTTTTAGGAGACAGAAAACATTTGAGGCCCATATGAGAGATATTCATAGCAATAAAAACGAGCCCTTGGACGAGTTCAGCGAACCCGAGGATCTTATGGAAGGAATAAATGTGGTCGTGGATACTACCGATCCTCACGATGATGAAGACGATTCGAAGGCCTGGTACCGAGAAGAAGACCTCCATCAAACCGAAGAGGATTTAAAAGAACTGGAGGCTGACAACGGCCACATCTGTCACCTCTGCAAGCAGCCCTTTCCTCTCAGGGCGATTCTACTTCAGCATTTAGTGACTTGCCGCGCCAGCTCAGGAAATACAGAATCAGCCCCGTTAGCAGTAGTGAAAAACaacaataagaaaaataagaagaaagcAGCGCTTCAATGCACCGAATGTGATCGTGTGTTTGCGCACCGCAATTCCTTAGTGTATCACATGAGAAGCCACACGGGCATCAGACCGCACCAGTGCGAGCAGTGCGGCAAGAGCTTCTTCGCCTCCAGTGCCCTCAAAGTCCATTTACGACTCCACTCCGGCGACAAACCTTACAATTGCGAGCACTGCGACAAGAAATTCAGGCAATGGGGCGACCTCAAATACCACATAACCTCCTTGCACTCTAATGAGAAGAACTTCCAGTGCGAGTACTGCGGGAAGGAGTTTGCCAGGAAATACTCCTTGGTGGTTCATCGAAGGATCCACACGGGAGAGAAGAATTACAAGTGCGAATTCTGCGGGAAGACGTTCCGCGCCTCGTCTTACCTGCAAAACCACCGAAGGATCCACACGGGCGAGAAGCCACACATGTGTTCAATTTGCGGCAAGCCGTTCCGCGTCAGGTCGGACATGAAGAGGCACCAGAAGACCCACACCAAAGAACCGCCCGCTCACAAAACGTCCAACTTATCCTCTCTCACCAAAGTGGAAAAGGAGGAAGTGGAAGAGGTGGAGGAAGAAGAGCTGAGCAGCGAACTGCACATCGAGGACGAAGAGGCGGCGGGACACCTGCTGACGGAATATAATCCCGAGCAGTTGGAGGTGGACAGGACGGTTAGAGTACCAAATAGGAACTTGTACATAAACGGTCACGAATTGTTCTTGGTGACGTATCCCAGCGAGATTCGTACTGGCGAGCCGTCGTCGACGTCGTCTTGGGTCCACACGTCTAATTCTTAG
Protein Sequence: METGKNNRELLDNIVIADNSATPQYMIHRIPENSQLSTELLQQHNGLVVDLGGNDFIPVSYTSEDLLSQDLTEEDRNLAAALVAVQLSQQQKQQQLQDITLPSLVTNSNLGNKILEDPQLIISEKTGSTSYLRIVNSENLYVEQQPLPKLVDTVRFSSVNPNFSEGAVISPVKKEDEKADSDRESLRNDHRSSKKSLPHKKRISRKLKKNTAAAARKIVCNLCEQTFNSNDDFAQHELLCQTTITPINQASVFSCQICNEPFQEQLRFFEHLKKHYEPGGTGGNPALPSTSTQKTVEEPQAEKVSDQTENDRQESLLSSLLNLSCIECNKTFRRQKTFEAHMRDIHSNKNEPLDEFSEPEDLMEGINVVVDTTDPHDDEDDSKAWYREEDLHQTEEDLKELEADNGHICHLCKQPFPLRAILLQHLVTCRASSGNTESAPLAVVKNNNKKNKKKAALQCTECDRVFAHRNSLVYHMRSHTGIRPHQCEQCGKSFFASSALKVHLRLHSGDKPYNCEHCDKKFRQWGDLKYHITSLHSNEKNFQCEYCGKEFARKYSLVVHRRIHTGEKNYKCEFCGKTFRASSYLQNHRRIHTGEKPHMCSICGKPFRVRSDMKRHQKTHTKEPPAHKTSNLSSLTKVEKEEVEEVEEEELSSELHIEDEEAAGHLLTEYNPEQLEVDRTVRVPNRNLYINGHELFLVTYPSEIRTGEPSSTSSWVHTSNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00166290;
90% Identity: iTF_00110802;
80% Identity: -