Malt039264.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:19543273-19565034[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0085 0.61 12.1 1.8 2 23 135 156 135 156 0.95 2 15 7.8e-05 0.0057 18.5 0.4 1 23 159 181 159 181 0.98 3 15 0.0024 0.17 13.8 0.3 1 23 187 209 187 209 0.96 4 15 0.00021 0.015 17.2 1.2 2 23 215 237 214 237 0.97 5 15 0.037 2.7 10.1 1.0 2 23 244 266 243 266 0.90 6 15 0.0082 0.6 12.1 5.6 1 21 272 292 272 293 0.93 7 15 0.00012 0.0088 17.9 0.4 3 23 330 350 329 350 0.97 8 15 0.045 3.3 9.8 0.8 1 23 354 376 354 376 0.97 9 15 0.018 1.3 11.1 0.1 2 19 383 400 382 402 0.94 10 15 0.00015 0.011 17.6 3.0 1 23 409 432 409 432 0.96 11 15 0.0055 0.4 12.7 0.3 2 23 732 753 731 753 0.96 12 15 0.00015 0.011 17.6 2.3 1 23 756 778 756 778 0.97 13 15 0.0012 0.089 14.7 1.4 1 23 784 806 784 806 0.97 14 15 0.00039 0.029 16.3 4.1 2 23 813 835 812 835 0.95 15 15 0.014 1 11.4 0.1 2 21 842 861 841 861 0.97
Sequence Information
- Coding Sequence
- ATGAACGGTGTACTTACAGTTAGGGATAAAACTACACAGCAGATTATAACTCAGCCTGTCTTTATcccattaataatattaaaggaGAATGAAACGAGCAATGCGAAAAAGCCTAATACGAATTTTAACTTGAAACCTACAGAAACTACAACAAAAAGTGTAAGAATAAATGATACTGATACTGTAAATACATGTAACAAGAGTAATATCAGTGAAGAAATTATTATATCCGATTCAGAAGATGACGCACAAAGTCCAGGTAAATTAAAATCGCCTAGAACTCGTAAAAACTACGTTCACAAGGAGAGAATAAAAGGTTTAGTGAAGCTGAgcgaaaaagagaaaaaaaagagAAGAGAAGGGAAAAAAAAGAAGAGAGAAGAGAAAAAACGGACCAGCCCTACATGCGGCACGTGTAATGAAATATTTAAATCAAAGGAAGATTTACAATACCACTTTCATATACACCCTCCTTTCATTTGTGAGAACTGCGGTAGGGGCTTCGTGAAAAAGGAATCATTCAACGCACACAGAATCACCCACAATGATCCGAATACCTTCATTTGCGAAGCCTGCGGGAAGGGATGTAAGGATGCTGCCTCCTTACGGGTTCATTTCCAAATACACGAAAATAAAATCAGCAAGTGTACTTTGTGCGAggaatcatttaataataaaggaAAACTTACCTATCACATAAAGAAGGTTCATCGGGAACGACCAACCTTACAGTGCTCATACTGTGGGAAGTTGTTTACGAATCAGCAAGGCCACAACTTGCATGTCAAgATAATCCACTTTAAGGTGAAGCCGCACGAGTGCAATATTTGTCATAGAAAATTCGGTAGAAGGGATTATTTGAGAAACCATAAATGCTCCTCGACTGGCCAACCACGAACAATAAGACATTACAGTGGCTTGTCTACTAGTGAGAAACGGCTAGAATGGATTAATCGCACAATAAAAGATAACGGTGAAGCTGCTCCCTGCAAATTCTGCGGGAAGGCATTTCGCACTATAGTGGCGATGAAGCGGCACTTGTTGACGCATGTCAAACGATATTCCTGTAAATTTTGTCCACTGACCTTTGGTACTAAAGCTTTAAGTCAGAGGCATGAGAAGATACATGAAGAAGGGAAAATTATcaggTGCGACGTGTGCTGGAAGCGATTTGAATCCAAGGAAATGCTAGACAAGCACTCTCTCTGCCATAAAAATGCTCGATATACCTGCGAAACATGTGGGAAAATGTTCAATAGATTATACTTGATGAACCACCACAGATTAATGAACCATATAGATACATCTGACAATGACAAAGTGAACAAAATTGTTAATGATAGTTTACTGGAAATCAGGGATCCCGAGCCTTCGTTAGACATGTCTGATACAAACATCGTTCATATCACTGTGCCATCCAGATATTCAGATGATAGCAATTGTTTTGCCGAGTTCTCCAATTCACCCCAGTTTCCGGAGGAAGCTTGTGAAGATTCAAACAGTCAAACCTATAATGaaattataaccAATTCATTTGCCCAACCTGCTGTTGAAGAGGAAGAGTACCATTGTAGGACATGCTTAAGTGTTATTACGAAATCCACAAGTATTTGGGTTACGGAAACCCTCATTTTAGACAAAAACGTTAGAGATGTAATAATCTTTCTAGTTCCTgaaatgGAATCAAAATTGGAGGATGAAGAGGTAGTGTGCACTTCCTGTTTGGAAGTCCTTAAATCCACGATGAAGTTTATTGTAAAGTGTTTAGAAGTGGACGCTATACTTACAAAGGAAAAGGAAGAAATGCAAGGAGTTGAGGGTAGTATAGaaaaatgtaaaGATGTTaaaattgcagatattaagGATGAGGAAATTGACGAGGAAATTGATGAGGAACATGATTATTGCGGTAAAGTCATATCCGTGGGTGACATCATATCGACAGAAGATGTTGCTGATATAAATGAAGACGTCACTCTATTGGAGCAAGCAGTTGATGAAGTCAATGAAAGAGATAGTGTAGAGTTGGACTATGAAAACATGTCCTATGTTGAAAACAATGTTGAAATTCAGTATGAGATTGCGGAAGTGTGGCTTCCAAACAAGGAGGAAGAATTAAGTGAACAAACAGTTTCTTTACAAGATTATGAAAGTTATGATGAGGATGCAAATGTCGAAGAAATAGAAACTCTTAGCTGTTCGACTTGTATGGAAAGttttaccACGAAGGAAGATTACGAGGTCCATTTGCAGGTACACCCTCCTCACATTTGTGAAACATGCGGTGAGACGTTCACCAAGACGGAATCGTTGAGGACACATAGACTCACCCACATCGATCCGAACAGTTACATTTGTGAGGTGTGCGGCAAAGGTTTTAAAGATTACGGAACCCTACAGTGTCACCTAAAGAACCACTCGGACGATGTAATGTGCACCTgtgaaaagtgttccaaaacgTTTAAGAATAAGAGACTGCTCGACATCCACATGAAATACGTCCATGACCAGGTTTACGACACCCAGTGCACCATCTGCGGCATTTTGACCAAGAACGAGGTGTCGCTTAAAACTCACATGAGGTAA
- Protein Sequence
- MNGVLTVRDKTTQQIITQPVFIPLIILKENETSNAKKPNTNFNLKPTETTTKSVRINDTDTVNTCNKSNISEEIIISDSEDDAQSPGKLKSPRTRKNYVHKERIKGLVKLSEKEKKKRREGKKKKREEKKRTSPTCGTCNEIFKSKEDLQYHFHIHPPFICENCGRGFVKKESFNAHRITHNDPNTFICEACGKGCKDAASLRVHFQIHENKISKCTLCEESFNNKGKLTYHIKKVHRERPTLQCSYCGKLFTNQQGHNLHVKIIHFKVKPHECNICHRKFGRRDYLRNHKCSSTGQPRTIRHYSGLSTSEKRLEWINRTIKDNGEAAPCKFCGKAFRTIVAMKRHLLTHVKRYSCKFCPLTFGTKALSQRHEKIHEEGKIIRCDVCWKRFESKEMLDKHSLCHKNARYTCETCGKMFNRLYLMNHHRLMNHIDTSDNDKVNKIVNDSLLEIRDPEPSLDMSDTNIVHITVPSRYSDDSNCFAEFSNSPQFPEEACEDSNSQTYNEIITNSFAQPAVEEEEYHCRTCLSVITKSTSIWVTETLILDKNVRDVIIFLVPEMESKLEDEEVVCTSCLEVLKSTMKFIVKCLEVDAILTKEKEEMQGVEGSIEKCKDVKIADIKDEEIDEEIDEEHDYCGKVISVGDIISTEDVADINEDVTLLEQAVDEVNERDSVELDYENMSYVENNVEIQYEIAEVWLPNKEEELSEQTVSLQDYESYDEDANVEEIETLSCSTCMESFTTKEDYEVHLQVHPPHICETCGETFTKTESLRTHRLTHIDPNSYICEVCGKGFKDYGTLQCHLKNHSDDVMCTCEKCSKTFKNKRLLDIHMKYVHDQVYDTQCTICGILTKNEVSLKTHMR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -