Malt042348.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:38980116-38987133[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0033 0.24 13.4 6.2 1 23 312 334 312 334 0.99
2 16 0.0025 0.18 13.8 0.9 1 23 343 365 343 365 0.99
3 16 5.4e-05 0.0039 19.0 3.0 1 23 374 396 374 396 0.99
4 16 0.045 3.2 9.8 2.1 1 23 405 427 405 427 0.97
5 16 5 3.6e+02 3.4 1.2 1 23 436 458 436 458 0.95
6 16 0.0016 0.11 14.4 0.5 3 23 468 488 466 488 0.97
7 16 4.1e-05 0.003 19.4 3.0 1 23 497 519 497 519 0.99
8 16 0.017 1.2 11.2 4.7 1 23 528 550 528 550 0.98
9 16 0.00026 0.019 16.9 1.3 1 23 559 581 559 581 0.98
10 16 0.00038 0.028 16.3 1.1 1 23 590 612 590 612 0.99
11 16 0.00037 0.027 16.4 3.8 1 23 621 643 621 643 0.98
12 16 0.009 0.65 12.0 4.7 1 23 652 674 652 674 0.98
13 16 0.0021 0.15 14.0 0.4 1 23 683 705 683 705 0.97
14 16 1.7e-05 0.0012 20.6 4.2 1 23 714 736 714 736 0.98
15 16 0.03 2.2 10.4 5.9 1 23 745 767 745 767 0.99
16 16 6.4e-05 0.0046 18.8 0.8 1 23 776 798 776 798 0.99

Sequence Information

Coding Sequence
atgcagCCAGAAAACCTTAACAACACATATTTTTGCAAGCTATGTCTTCATATCATAAACTAtacaaattctgaaataatagaAGGAGTTACGAAGGAAATTCTAGAAGCTGTTTTGCCAAATCTGGGTTTGGAAGAGAGACATAAACAACGGATGTGTAAAGCTTGTTGCTCGAAATTACTTCCTGCCTTTAATTTTAAGTCGGCATGTATGGGTACTGAGGATCTTTTGATATCTCATGTTAATGCCAACAAAGTATCAGAGATTGActtgaaaaaaatgtacctgTCGATGAATGAAAATATTGAGTTAAGTGATATATTGcaaaatcagaaaatttgtcGATTGTGTCTTCAGCTGGTAACATACGGATTTGTGTCTCTAAAGGAAGTGGACAATGACATAATTGATACATATATACCTCAAATTAACATCAGTGCTACAAAGGAGCCGGTTATATGTGGACCATGTTTCGACTTGCTTCATACCCATGGCGGTTTTGTAAAGAACTGCCTTGAAATACAGACAAAGAACGAAAGTACCGATAAACCACCTTATATTAAATCTGAAGAGATTGAAATTAAACTTGAAGATTGTCGGCATACGCAGGAAACGTATAAAAGCATCGATAATTGTCCTTATATTAAATCTGAGGAAATTGATATAAAGTCGGAGGAAGGAGATCAAGATAATGATTCCTCTTCATACAATTTAAATGGGGAAACAACTGAAAAGAAAATGAAGcgtatttctgaaaatataggACAAACAGAAGATGAATATATGCTTGAGCGTGATAGCATAGTTCTAAAAAATGAGTTCGAAGCTCCATTAGATATATCATCGCACTCAAATAGATATAAACGAAAGTTTGAAGGTGATCTAAAAcgtaaaattattacaaaactgAAGTGCTCTCTGGACTttcaaatgtacaagtgtgataaATGTACTTATGAAACTAGACACAAAAGATACCTAAAAAATCACCAATTAACACACAGAGACCCTTCTGAAGTTCAAATGTACAGGTGTGACGCTTGCGATTATGAAGCTAAACGTAAGTTTGATCTGAAAAGTCATCAATTAACACACAAACGtccttctgaaatccaaatgtacagatGCAATGAATGCGATTATGAATGTAAACGTAAGGGTGGGCTAAAAAGTCATCAATTAACCCACAAAAATCCTTCTGAAATTCAAATGTACATGTGTGACACTTGTACTTTcgaaactaaatataagaaaGACCTGAAAGAGCATCAGGTAAGACACAATGACCCTTcggaaatccaaatgtacagcTGTTATGCATGTGGTTATGAAGCTAAATGCAAGGGTGAGCTGAAAACTCATCAGTTATTGCACAAAGACACTAAAATCGAAATGTACGGGTGTGATGTGTGTGATTATGAAACTAAACGTAAGTTTGACCTGAAAAGTCATCAGTTAATACACAAATGCCCTTccgaaatccaaatgtacagatGCAATGAATGCGATTATGAGTGTAAACGTAGAGGTGAGCTAAGGAGTCATCAACTAACACACAAAGAtccttctgaaatccaaattTACAAATGTGATACTTGTACTTATGAAACTAGATATAAAAAACATCTGAAAGATCATGAACTAACACACAAAGACGCTTCTGAAATACAAATGTACAGGTGTGATGTGTGTGGCCATGAAAGTAAAAGGAAGGGTGAGCTGAAAAGTCATCAGTTACTGCACAAAGAtccttctgaaatccaaatgtacaggtGTGATGCATGTGATTATCAAACTAAACGTAAGGGTGACTTGAAAAGCCATCAATTAACACACAAAGGCCCTTCAGATATCCGAATGTACAGGTGCAGCGAATGTGATTATGAATGTAAACGCATTAGTGAGCTAAAAAATCATCAATTTACACACCTAGATCCTTCTGAAATTCACATTTTCAAATGTGATACTTGCActtatgaaactaaatataagaaaCACTTGAAAGATCATCAGTTAatacacaaagacccttctgaaatccaaatgtacaaatgtgatgcaTGTGACTATGAAACGAAACGTAAAGGTGACCTGAAAAGTCATGAATTAATACATAAAGGCCCTGCTGAGGTTCAAATGTACAGATGCAATGAATGTGATTATAAATGTAAACGGAAGAGTGAGTTGAAAAGTCACATATTATCACACAAAGACCCATCTGAaattcaaatgtacaaatgtgatactTGTActtttgaaactaaatataaaaaacacctGAAAGATCATCAGTTAAGACACAAAGACCCTTCCGAAATTCAAATGTACAGGTGTGATGTATGTGATTATCAAACGATACGTAGAGTTGACCTGAAACGTCATCAGTTAACACACAAGAGACCAATCTGA
Protein Sequence
MQPENLNNTYFCKLCLHIINYTNSEIIEGVTKEILEAVLPNLGLEERHKQRMCKACCSKLLPAFNFKSACMGTEDLLISHVNANKVSEIDLKKMYLSMNENIELSDILQNQKICRLCLQLVTYGFVSLKEVDNDIIDTYIPQINISATKEPVICGPCFDLLHTHGGFVKNCLEIQTKNESTDKPPYIKSEEIEIKLEDCRHTQETYKSIDNCPYIKSEEIDIKSEEGDQDNDSSSYNLNGETTEKKMKRISENIGQTEDEYMLERDSIVLKNEFEAPLDISSHSNRYKRKFEGDLKRKIITKLKCSLDFQMYKCDKCTYETRHKRYLKNHQLTHRDPSEVQMYRCDACDYEAKRKFDLKSHQLTHKRPSEIQMYRCNECDYECKRKGGLKSHQLTHKNPSEIQMYMCDTCTFETKYKKDLKEHQVRHNDPSEIQMYSCYACGYEAKCKGELKTHQLLHKDTKIEMYGCDVCDYETKRKFDLKSHQLIHKCPSEIQMYRCNECDYECKRRGELRSHQLTHKDPSEIQIYKCDTCTYETRYKKHLKDHELTHKDASEIQMYRCDVCGHESKRKGELKSHQLLHKDPSEIQMYRCDACDYQTKRKGDLKSHQLTHKGPSDIRMYRCSECDYECKRISELKNHQFTHLDPSEIHIFKCDTCTYETKYKKHLKDHQLIHKDPSEIQMYKCDACDYETKRKGDLKSHELIHKGPAEVQMYRCNECDYKCKRKSELKSHILSHKDPSEIQMYKCDTCTFETKYKKHLKDHQLRHKDPSEIQMYRCDVCDYQTIRRVDLKRHQLTHKRPI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-