Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073434.1:43741059-43744148[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0086 0.63 12.1 1.1 2 23 100 121 99 121 0.96

2 12 6.2e-06 0.00045 22.0 1.2 1 23 127 149 127 149 0.98

3 12 2.1e-06 0.00015 23.4 2.9 1 23 155 177 155 177 0.97

4 12 3.8e-06 0.00027 22.7 0.1 1 23 183 205 183 205 0.97

5 12 0.00065 0.047 15.6 7.7 1 23 211 233 211 233 0.97

6 12 0.0016 0.12 14.4 0.7 2 23 242 263 241 263 0.97

7 12 0.00011 0.0077 18.1 3.1 1 23 275 297 275 297 0.98

8 12 6.7e-06 0.00048 21.9 4.3 1 23 302 324 302 324 0.98

9 12 0.00047 0.034 16.1 4.4 1 23 330 352 330 352 0.99

10 12 0.0032 0.23 13.4 1.4 1 23 359 382 359 382 0.95

11 12 0.00013 0.0096 17.8 7.0 1 23 388 410 388 410 0.98

12 12 0.029 2.1 10.4 0.2 2 23 432 452 431 452 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0086	0.63	12.1	1.1	2	23	100	121	99	121	0.96
2	12	6.2e-06	0.00045	22.0	1.2	1	23	127	149	127	149	0.98
3	12	2.1e-06	0.00015	23.4	2.9	1	23	155	177	155	177	0.97
4	12	3.8e-06	0.00027	22.7	0.1	1	23	183	205	183	205	0.97
5	12	0.00065	0.047	15.6	7.7	1	23	211	233	211	233	0.97
6	12	0.0016	0.12	14.4	0.7	2	23	242	263	241	263	0.97
7	12	0.00011	0.0077	18.1	3.1	1	23	275	297	275	297	0.98
8	12	6.7e-06	0.00048	21.9	4.3	1	23	302	324	302	324	0.98
9	12	0.00047	0.034	16.1	4.4	1	23	330	352	330	352	0.99
10	12	0.0032	0.23	13.4	1.4	1	23	359	382	359	382	0.95
11	12	0.00013	0.0096	17.8	7.0	1	23	388	410	388	410	0.98
12	12	0.029	2.1	10.4	0.2	2	23	432	452	431	452	0.96

Sequence Information

Coding Sequence: ATGGACGCTTCAACTGTAAAAATTAAGAAAGAAGTCGAAGATCTGCCAGAGGATAACCCAGACTTGGTAGACATTAAGGAGATCAAGGACTTAGCTACAGATTGTTCAGAAAACTCTTCAAATAATCAATTCCACACCATAAACATTAAGACTGAACTGGAAGATGAAAACCAAGAAAACGATTTCTCAGTCGAAGGCAATTTTGCTATAGGAAAAACGGTTAGTTGTAAAGATAGTGATGTAAACTGCCAAAGTAAAATAAAACCGAAACGTAAGAGACTCCCCAAGACTAAAGTTAAATGCGAGCAGTGCGGGATAATGTGTAGGGATAAAAACGGCTACAAGCTCCATCTTATGGACCACACAGGCGAACGACCGTTTAAGTGTAACTTGTGCGGAAAAACGTACAAAAAGGCCATGGATTTGACTTACCACATGATCTCACATACAGGTAACCACGAACACCACTGCGAAACGTGCGGAAAGGGTTTTACGGTCAAAAGCGCTTTGAAGGCTCACCTACGCACGCACACGAAAGACAAGCCTTACGTGTGCCCTGTATGCGGCAAAGGCTTCTCGCACAGTTCCAGCTTGAAGCCCCACATCGCCATCCACAGCGAGGTGTGCTCATTTCACTGCGACCGATGCGACAAGAAGTTTAAGACGAAAAAGTCGCTGGCCCATCACACCCAGTCGCACGATTTGGACGAGGGGAAGGGACTACAGTGCGGGATTTGCTTCAAGTTCTACAAGTCCAAGGAGAGCATAAGGATACATCTGAAGATCCACAGGAAGAACGACAAGGATCAAAATCAACAGCTGTATTCGTGTGAGCAGTGCGGCAACACGTAcaaacatctcatcagtttgaAGAACCACATGCGGTACCATACCAATGAAAAGTTCGAGTGCCACATGTGCGACAAGTCGTACATCGACAAGAATCACTTGCGGATCCACCTTAGGAACCACACGGGAGAGACGCCTTACAAGTGCGAGACCTGCAGTCGAACTTTCAGGAGACGAGACAGCTACCTTTACCACAGAACCACGCACGATACCAACAGGCAGACCTACAAATGCAGCATGTGCGACAAAGttttGGTGTGTAAAAGTAGCCTGCGCGCCCACCAGACCTTGGCCCACTCGTCCGAGAAGAAGCACCAGTGCCATCTGTGCGAGAAGAGTTACAAGATGCGTTACGAACTCACCAAACATCTGCGCAAGCACGACAAGAACTGGGAGAACGTCGACAAGGACGTTTTGTCCGTGGAAACAGGCAGTAACAACGTTGTTTGTGAAATTTGTGGGGAAGATTGCCGGGAGGACGGATTAGAGATGCATATGTCGAAGCACGAGGTGAAACCGATTAAGTGCGAGTGTATGAAGTTGTTTTACGCGGAGAACGAGTATAAGAAGCATATTGGTGAGTGTGAAACGGTGACGAAAGGTGAAAGTAAGATGGAACAGGTGTTTATTAAGAAAGAAGCGGTAAAGAAAGAGTGTGTGGATGATTAA
Protein Sequence: MDASTVKIKKEVEDLPEDNPDLVDIKEIKDLATDCSENSSNNQFHTINIKTELEDENQENDFSVEGNFAIGKTVSCKDSDVNCQSKIKPKRKRLPKTKVKCEQCGIMCRDKNGYKLHLMDHTGERPFKCNLCGKTYKKAMDLTYHMISHTGNHEHHCETCGKGFTVKSALKAHLRTHTKDKPYVCPVCGKGFSHSSSLKPHIAIHSEVCSFHCDRCDKKFKTKKSLAHHTQSHDLDEGKGLQCGICFKFYKSKESIRIHLKIHRKNDKDQNQQLYSCEQCGNTYKHLISLKNHMRYHTNEKFECHMCDKSYIDKNHLRIHLRNHTGETPYKCETCSRTFRRRDSYLYHRTTHDTNRQTYKCSMCDKVLVCKSSLRAHQTLAHSSEKKHQCHLCEKSYKMRYELTKHLRKHDKNWENVDKDVLSVETGSNNVVCEICGEDCREDGLEMHMSKHEVKPIKCECMKLFYAENEYKKHIGECETVTKGESKMEQVFIKKEAVKKECVDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -