Malt042248.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:38126407-38132539[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 8.2 5.9e+02 2.7 0.4 12 23 252 263 251 263 0.93 2 14 0.017 1.3 11.1 0.1 5 23 276 294 275 294 0.95 3 14 0.00029 0.021 16.7 0.6 1 23 303 325 303 325 0.98 4 14 0.00029 0.021 16.7 0.7 1 23 334 356 334 356 0.98 5 14 7.1e-05 0.0052 18.6 0.8 1 23 365 387 365 387 0.98 6 14 2.2e-05 0.0016 20.2 0.3 1 23 396 418 396 418 0.98 7 14 0.00059 0.043 15.7 0.7 1 23 427 449 427 449 0.96 8 14 1.9e-05 0.0014 20.5 0.5 1 23 458 480 458 480 0.98 9 14 4.5e-05 0.0032 19.3 1.7 1 23 489 511 489 511 0.98 10 14 1.6e-05 0.0012 20.7 0.3 1 23 520 542 520 542 0.98 11 14 0.19 13 7.9 2.8 1 23 551 573 551 573 0.96 12 14 1.1e-05 0.0008 21.2 1.5 1 23 582 604 582 604 0.98 13 14 6.7e-05 0.0049 18.7 2.1 1 23 613 635 613 635 0.98 14 14 9.4e-05 0.0068 18.3 4.7 1 23 644 666 644 666 0.98
Sequence Information
- Coding Sequence
- ATGGAGAATTTTGAGGAACGGTATTGTGCGCTTTGCCATAGTGCCGTAAGCCCtggaaattttaacaaaattcaaaACGTTACAAAGGATATTTTTGATATTCTTTTGCTGAAACTAGACTTTACTGATGGAACTAACCACGTAATGTGTAATATTTGTTCAGTAAAGGTAATGGAAGCATTCAAATTTAAGTCCATGTGTATTTGTACTGATAACACGATAATTCCTTTTGTCGATGATGAAACAGAATGTTTAGTAGATTTAAGACAAATTTATGCAAAGGAAAAAGGAATAGACCCATTGGATAATCATAAAGTTTGTAGGTTGTGCATGCAGTTGATAAAGGGAGAATTTGTTTCGATGCAGGAAGTAAATGTTGATGTGTTCGAGAAATATATTCCAGAAATAAATTTGAGTGTCGTCCAGGAGCCTATTCTTTGCAGTCGATGTTTCAATTCCCTTTGTACCCACAGCAATTTCATAAAGACCTGCGTTAAAgtagaaaaggtaaacaatatatgTGGCACAGCTTCTAGTACTGGGCACTGCGAGCTCTCAGTAGTTCCTAACATTAAAACCGAGATTCAAATTAAAGCTGATCCAAATGCACAAGAAGATGATTTGAGTGAAACTGAGtctattgtaataaaatctgaGTATGAGGATATGCTAATAGAAGAAAACGAATCTATTAATATAAAACCAGAAAGTGATATAACTGACTGTAAATTGGGACTCGAAGGTGATCAAATGCAAAAATCCAGTCTTAAGATCCACCAGTTAGTCCACAAAGAAGTTTCAGGAGTGCCAATGTACACATCTGACATCTGTGACTATGCAGCCAAGCAGAAGTACCAACTTAAGCGCCACCAATTTGTTCACAGAGATGTTTCAGAAGTGAAAATGTACAAATGCGACATCTGCAACTATGCAACCAAGCTAAAAGGCAACCTTAAGTATCACCTGTTAGTTCACAAAGATGCTTCAGAAGTGACAATGTACAAATGCAACATCTGTGACTATGCAACCAAGCTAAAAGGCAACCTTAAGTATCACCTGTTACTTCACAAAGATCCTTCAGAAGTGAAAATGTACAAATGCGACATCTGCGACTATGCAGCCAAGCAAAAAGGCTCCCTTAAGCATCACCTGTTAGTTCACACAGATGCTTCAGAAGTGACAATGTACAAATGCGACATCTGCGACTATGCAGCCAAGCGAAAAGGCACCCTTAAGCGTCACCTGTTAGTTCACACAGATGCTTCAAAAGTGACAATGTACAAATGCGACGTCTGCGACTATGCAGCCAAGCTGAAGTCCCAACTTAAGCGCCACCAATTTGCCCACAAAGATGCTTCAGAAGTGGCAGTATACAAATGCGACGTCTGCGACTATGCAGCCAAGCAAAAAAGCACCCTTAAGCGTCACCTGTTAGTTCACACAGATGCTTCAGAAGTGACAGTGTACAAATGCAGCATCTGTGACTATGCAGCCAAGCAAAAAGGCAACCTTAAGCGTCACCTCTTACATCACAAAGATGCTTCAAAAGTTACAGTGTACAAATGCGACATATGCGACTATGCAGCCAAGCAAAAAGGCAACCTTAAGCGTCACCTGTTACTTCACACAGATGCTTCAGAAGTGACAGTGTACAAATGCAACATCTGCCGCTATGCAACCAAGCTAAAAGGCAACCTTAAGTGTCACCTGTTACTTCACAAAGATGCTTCAGAAGTGGCAATCTACAAATGCGACATCTGCGATTATGCAGTCAAGCAAAAAGGCAACCTTAAGCGTCACCTGTTACATCACAAAGTTGCTTTAGAATTTCCAGTGTACAAATGCGACATCTGCGACTATGCAGCCAAGCAAAAAAGCACCCTTAAGCGTCACCTGTTACATCACAAAGATGCTTCAGAAGTTACAGTGTACAAATGCGACATCTGCCACTATGCATCCAAGCGGAAGGACCAACTTAAGCACCACCAGTTAGTCCACAAAGACGCTTCAGAACTAAAAATGTACAAATGCAACAGGCGATTACGAAAgcaagtataa
- Protein Sequence
- MENFEERYCALCHSAVSPGNFNKIQNVTKDIFDILLLKLDFTDGTNHVMCNICSVKVMEAFKFKSMCICTDNTIIPFVDDETECLVDLRQIYAKEKGIDPLDNHKVCRLCMQLIKGEFVSMQEVNVDVFEKYIPEINLSVVQEPILCSRCFNSLCTHSNFIKTCVKVEKVNNICGTASSTGHCELSVVPNIKTEIQIKADPNAQEDDLSETESIVIKSEYEDMLIEENESINIKPESDITDCKLGLEGDQMQKSSLKIHQLVHKEVSGVPMYTSDICDYAAKQKYQLKRHQFVHRDVSEVKMYKCDICNYATKLKGNLKYHLLVHKDASEVTMYKCNICDYATKLKGNLKYHLLLHKDPSEVKMYKCDICDYAAKQKGSLKHHLLVHTDASEVTMYKCDICDYAAKRKGTLKRHLLVHTDASKVTMYKCDVCDYAAKLKSQLKRHQFAHKDASEVAVYKCDVCDYAAKQKSTLKRHLLVHTDASEVTVYKCSICDYAAKQKGNLKRHLLHHKDASKVTVYKCDICDYAAKQKGNLKRHLLLHTDASEVTVYKCNICRYATKLKGNLKCHLLLHKDASEVAIYKCDICDYAVKQKGNLKRHLLHHKVALEFPVYKCDICDYAAKQKSTLKRHLLHHKDASEVTVYKCDICHYASKRKDQLKHHQLVHKDASELKMYKCNRRLRKQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01014878;
- 90% Identity
- -
- 80% Identity
- -