Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073430.1:14733019-14746242[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.099 7.1 8.8 1.4 2 23 177 199 177 199 0.94

2 21 0.12 9 8.4 1.1 1 19 325 343 325 346 0.94

3 21 3.9 2.8e+02 3.7 6.3 1 23 375 398 375 398 0.92

4 21 0.83 60 5.8 0.3 5 20 408 423 406 425 0.91

5 21 0.04 2.9 10.0 0.4 1 21 431 451 431 454 0.90

6 21 0.00017 0.012 17.5 2.4 2 23 525 546 524 546 0.97

7 21 0.84 61 5.8 0.2 1 22 564 584 564 586 0.79

8 21 0.0055 0.4 12.7 0.5 2 23 590 611 589 611 0.96

9 21 0.00014 0.0098 17.8 0.2 2 23 641 662 640 662 0.96

10 21 1.2 85 5.4 0.6 1 23 684 707 684 707 0.93

11 21 0.062 4.5 9.4 0.6 2 23 721 742 720 742 0.97

12 21 2.1e-05 0.0015 20.3 6.6 1 23 774 796 774 796 0.98

13 21 0.03 2.2 10.4 1.6 3 23 811 831 811 831 0.96

14 21 0.00051 0.037 15.9 1.5 1 23 854 876 854 876 0.98

15 21 0.00077 0.056 15.4 0.6 2 23 890 912 889 912 0.95

16 21 0.00054 0.039 15.9 0.2 1 23 928 950 928 950 0.95

17 21 0.42 30 6.8 0.0 1 23 990 1013 990 1013 0.95

18 21 0.00075 0.055 15.4 2.1 2 23 1024 1045 1024 1045 0.97

19 21 5.1e-05 0.0037 19.1 0.3 1 23 1081 1104 1081 1104 0.97

20 21 1.8e-05 0.0013 20.5 1.2 1 23 1112 1134 1112 1134 0.98

21 21 0.01 0.74 11.9 0.1 1 23 1149 1172 1149 1172 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.099	7.1	8.8	1.4	2	23	177	199	177	199	0.94
2	21	0.12	9	8.4	1.1	1	19	325	343	325	346	0.94
3	21	3.9	2.8e+02	3.7	6.3	1	23	375	398	375	398	0.92
4	21	0.83	60	5.8	0.3	5	20	408	423	406	425	0.91
5	21	0.04	2.9	10.0	0.4	1	21	431	451	431	454	0.90
6	21	0.00017	0.012	17.5	2.4	2	23	525	546	524	546	0.97
7	21	0.84	61	5.8	0.2	1	22	564	584	564	586	0.79
8	21	0.0055	0.4	12.7	0.5	2	23	590	611	589	611	0.96
9	21	0.00014	0.0098	17.8	0.2	2	23	641	662	640	662	0.96
10	21	1.2	85	5.4	0.6	1	23	684	707	684	707	0.93
11	21	0.062	4.5	9.4	0.6	2	23	721	742	720	742	0.97
12	21	2.1e-05	0.0015	20.3	6.6	1	23	774	796	774	796	0.98
13	21	0.03	2.2	10.4	1.6	3	23	811	831	811	831	0.96
14	21	0.00051	0.037	15.9	1.5	1	23	854	876	854	876	0.98
15	21	0.00077	0.056	15.4	0.6	2	23	890	912	889	912	0.95
16	21	0.00054	0.039	15.9	0.2	1	23	928	950	928	950	0.95
17	21	0.42	30	6.8	0.0	1	23	990	1013	990	1013	0.95
18	21	0.00075	0.055	15.4	2.1	2	23	1024	1045	1024	1045	0.97
19	21	5.1e-05	0.0037	19.1	0.3	1	23	1081	1104	1081	1104	0.97
20	21	1.8e-05	0.0013	20.5	1.2	1	23	1112	1134	1112	1134	0.98
21	21	0.01	0.74	11.9	0.1	1	23	1149	1172	1149	1172	0.96

Sequence Information

Coding Sequence: ATGGCAGACCCCAAACTTGGTAATTTCCAATCTTGTTGCAGACTGTGTCTGTGCGAGAAGATGGATACTTTGAAATCCGTTTTCGATGAAGCTGTAGAGGACAGGACGTTACCGCAGAAGATTTTGCAGTTCGTAGCTGTGGAGATAACAAGTTCTGACAAAGTAACTACAATGGTTTGCGAACAGTGCATAAAGAAAGTCAATAATTGGCACGAATATAAAAGAGAATGTAAGAGTAACCAAAGCAAGTTGGAACAATGGATAAGAACTTGTTCCTCTAATGGGTTAGCAGACATAAGCCTTCAAATTAAAGAAGAACCGATGAACGATGGAGATGACAACAGTTGTGATCGTCCAGAAAATGATATCGTTGAGGTTTTGGTTAAAAATGAGCCCATAGATCCACCGGATGAACCCATGGAGGAGGAGTATAACGAGTTACCACCCCCTCTCACTCCTCACCCTCCACCTGGCACTGATTCTGAAAACTCCCAAGAAGGTAGTGTTCTTAGTACTTTAAGTAATAGACAATGCAGTGCTTGCAACAAACTATTTAGTAGCTCCGGGAATAGAAGGAAGCATGAAAAACAAATCCACGGCTTTCACCAACGTAGGTCTGGTGAACTTAGTCGAAGGAGGAGTCAAATGAATGAGGTTCCGATAACAGTAAACCTCGACGatCCTCTTGAAGACAGTAACTCTCAAGGAGAAACAAACGGACATCAAAATCCAGAAGTACCAACACCGGAACAACAAAAAATTCAGTTTGCTGCTGGCTTAAAACTGCTCCAAAAAAACGCGACTCCCATTTCTTGTGAGCCCCTTTCTAAGATAGAAttgagttatatcgagaaatgtAAAGCGATGGTAAATATGCATCGCACCCTAGAGTGTGCCTGTCACAACGTAGGGCATCCTAACCTCAAAGGTTTACTTTCACATCTTAGAGCATTGCGAATATGGTTTCCAGTTTTCACTTGTTACAACTGTATGATAACGTTTACCGACAGATCAACATTCACTAAACACAGTATAAGATGTCCAAAGTCTCAACTAGAAACAATCGTCAAGTTGAGTAACTTGAAAAAGCGCAGTGAGGTGAAGACTAGGCTGTATCAGAATTTTAAATGTACGTCTTGTAAGTTTATGTACAGTTTTCATGATGATTTCTGTAAACATGTCGATGAAGACCACTCTGATTTCGAACCCCCAAAGCACTGTAACTGTGGCAGAACTTTTGACAATCTAGAAGACTACAAAGACCACGTTTACGTGAGCTGCCTAGTCGAATATTACTGTGACATTTGCTTCATTACCACTAGAACTTTGGACGACTTTCAAAAACATTCCATTGCAGTCCACGATAGTTCCGAGGGCTTCATCTTGCTGCAAGACGATAACTACAAGATGCGAAAATCTTTAACACAGAGACAAGAGGTTTCCGAAGAAAACGTTATTGTAACTGGTAAGAGGGAAAAGAGAATGTCCATCAAAGCACCTATCTTAGAACCCGACGAAGATGATGGGGTCCCAAAGAAAAAAGTTTACTCGGAAGTTCTAGCGGGTTCTAAAGTATGCCCTATTTGCAGTAAAGAGTACTCGTCACACAATAACATGATGCGGCACTACAGGACACATCTCGATGTGTCTCCCTTGAAGACGTCAACTGGAACGAGTAACGACTCTCTATATTCATGTCCAGAATGTGGCGGAGTGTATAGCACGGTAGAATGGCAACACCACTTGGAAGAAAAACATGAACCAAAGACGTGCGGGGAATGCGGCAAGATATTCCAGTTCCAAACGGAGCTGGATCAGCACAGGAGCGTACATTTGAACCTTAAAGTGTACAGAGACTCCAAAACTCAGTCATATAAGACTTCGATGCTTAGTCCTGGATCCGAGGGAGAAATCATGCTTATGTGCGAAATATGCGATGTTATGTTCCCCACTAAGGAAGAGCTAAAGCAACACAAATTAACACACGAAAATGGATTACCTGTGTTAGAAAACTCAGAAGAACTAGAAACGGATTTAAAAGAGAGCAAATATTCATGTAAACCTTGTAACAAGGTATATTCCAGTTACGGTGGAATTTGGGAtcataataaaaagaaacacCCAGAGAAGAAAACACCTTTCACAGATGAATGGCCGAAACAGTGCCCTCTATGCGATAAAATATGTGCTACCGGCGCTGCATATTACCGTCACAAGCAAATCCACGAGAAGGAAAGAATTAACGCTGAGCATGCCGAAGTCACATCCACTAAAGCACCTGTTGCAAAAGGGAAAAATGATGAAGAAGAAGAATCCTATCACACGTGTAAACGGTGCTTCAAAGTGTTCTCCTCAAAGTACAACTTGAAGAATCACATGAAATCACACGGTATAAGTCCTACCACCAAAAAAGTTGCTAAGAAAGTCTGGTGTGAGGTGTGCCATCAGTCGTTCACTTCCACTGAGGCGATGCAAAAGCACAAAGAAGAGCACTCTGCCGAAGAACAGTCCCAGGCGCCGAATATAATTGATGGTGTGGAAGGTAAAGTACCATTTATATTCACCTGTGATGTTTGCGTGATGACTTTCACTACTAAAATGGCGTTGAAGAAACACAAGGAGAAACATGCTCAGGAAACTAAGCCAAACGTTCAGAAAACTCAGGTTTACTGCAAGTACTGTAAGATTGCTTTCGATTCAGTCGCTCAACTAACCAAGCACATGCATGTGGAACACGACGAGACGGCCAAACCTAAGGTTACTAAAGACAAACCAAAGCAGTTCTCTTGCGGTGTGTGTAAGAAGAATTTCCAAACCGCCTCAGCACTGTCCACCCATATGGGCTGGCATAAACGTAGCCCACATACTGGTGGCGAAGGCAAGCCggcgaaaatattaaaacaaaacaaaataaccaACAAACTAGCAAACACTCTTGTGAAACAAGAACCCATCGATCCTCCGGAATATCAATGCGTCACTTGTCTTGCGGAATTTCCAAATGATACAGCTCTTCAGGTACACATTTTAGAAAAGCATCGCAGCGTGAGTGCCGTCATGCTCATTCCTCGATGTAACACTTGTAATAAGGACTTTAACACTCAGGACGAATACGAAACCCACAAACGGCTGCACGACTTCTTGGAGCGACAGAAACAGCACGAGTTGCTCATGCAGCAAGAGCCTGGTGATGCTGCCGATATGAAATCTCTTGGCGCACAACCAAAGTTCAATAAAGGATTCCCTTGCAAGTACTGCAATGCAGCGTTTAGTAGGGCTGACACACTCAACGGGCACATACGGCAGTTCCATAAGGAGTTTGTCCAGAACGAATTCAAGTGTACGCAGTGTGACCGCGTCTTCGATAAACAGAATTCCCTGACCATCCATTTGAAGGTCCACGAGAAGCAGAAGACTGCGGTAAATGTTACTACCAAGCCGTTGTTCTCTTGCTCCATTTGCAGCATGGGTTTCGACTTACCTAAAGATCTGAGGGCTCATACAATCAGCGCCCATCCGTTCTGA
Protein Sequence: MADPKLGNFQSCCRLCLCEKMDTLKSVFDEAVEDRTLPQKILQFVAVEITSSDKVTTMVCEQCIKKVNNWHEYKRECKSNQSKLEQWIRTCSSNGLADISLQIKEEPMNDGDDNSCDRPENDIVEVLVKNEPIDPPDEPMEEEYNELPPPLTPHPPPGTDSENSQEGSVLSTLSNRQCSACNKLFSSSGNRRKHEKQIHGFHQRRSGELSRRRSQMNEVPITVNLDDPLEDSNSQGETNGHQNPEVPTPEQQKIQFAAGLKLLQKNATPISCEPLSKIELSYIEKCKAMVNMHRTLECACHNVGHPNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTKHSIRCPKSQLETIVKLSNLKKRSEVKTRLYQNFKCTSCKFMYSFHDDFCKHVDEDHSDFEPPKHCNCGRTFDNLEDYKDHVYVSCLVEYYCDICFITTRTLDDFQKHSIAVHDSSEGFILLQDDNYKMRKSLTQRQEVSEENVIVTGKREKRMSIKAPILEPDEDDGVPKKKVYSEVLAGSKVCPICSKEYSSHNNMMRHYRTHLDVSPLKTSTGTSNDSLYSCPECGGVYSTVEWQHHLEEKHEPKTCGECGKIFQFQTELDQHRSVHLNLKVYRDSKTQSYKTSMLSPGSEGEIMLMCEICDVMFPTKEELKQHKLTHENGLPVLENSEELETDLKESKYSCKPCNKVYSSYGGIWDHNKKKHPEKKTPFTDEWPKQCPLCDKICATGAAYYRHKQIHEKERINAEHAEVTSTKAPVAKGKNDEEEESYHTCKRCFKVFSSKYNLKNHMKSHGISPTTKKVAKKVWCEVCHQSFTSTEAMQKHKEEHSAEEQSQAPNIIDGVEGKVPFIFTCDVCVMTFTTKMALKKHKEKHAQETKPNVQKTQVYCKYCKIAFDSVAQLTKHMHVEHDETAKPKVTKDKPKQFSCGVCKKNFQTASALSTHMGWHKRSPHTGGEGKPAKILKQNKITNKLANTLVKQEPIDPPEYQCVTCLAEFPNDTALQVHILEKHRSVSAVMLIPRCNTCNKDFNTQDEYETHKRLHDFLERQKQHELLMQQEPGDAADMKSLGAQPKFNKGFPCKYCNAAFSRADTLNGHIRQFHKEFVQNEFKCTQCDRVFDKQNSLTIHLKVHEKQKTAVNVTTKPLFSCSICSMGFDLPKDLRAHTISAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227569;
90% Identity: -
80% Identity: -