Basic Information

Insect: Monochamus alternatus
Gene Symbol: -
Assembly: GCA_037114965.1
Location: CM073428.1:11954651-11956368[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.4e-05 0.0017 20.1 0.8 1 23 167 189 167 189 0.99

2 12 5.6e-06 0.00041 22.1 0.5 1 23 195 217 195 217 0.99

3 12 0.031 2.3 10.3 0.7 1 23 223 245 223 245 0.96

4 12 0.72 52 6.0 0.8 1 23 251 274 251 274 0.84

5 12 1.8e-05 0.0013 20.5 0.1 2 23 298 319 297 319 0.96

6 12 1.3e-06 9.5e-05 24.1 0.6 1 23 325 347 325 347 0.96

7 12 5e-07 3.6e-05 25.4 2.0 1 23 353 375 353 375 0.97

8 12 9.7e-06 0.0007 21.4 1.7 2 23 382 403 381 403 0.96

9 12 0.00021 0.016 17.1 0.7 3 23 411 431 409 431 0.96

10 12 3.2e-05 0.0023 19.7 5.7 1 23 437 459 437 459 0.98

11 12 5.5e-06 0.0004 22.1 0.3 1 23 465 487 465 487 0.98

12 12 5.4e-05 0.0039 19.0 5.7 1 23 493 515 493 516 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.4e-05	0.0017	20.1	0.8	1	23	167	189	167	189	0.99
2	12	5.6e-06	0.00041	22.1	0.5	1	23	195	217	195	217	0.99
3	12	0.031	2.3	10.3	0.7	1	23	223	245	223	245	0.96
4	12	0.72	52	6.0	0.8	1	23	251	274	251	274	0.84
5	12	1.8e-05	0.0013	20.5	0.1	2	23	298	319	297	319	0.96
6	12	1.3e-06	9.5e-05	24.1	0.6	1	23	325	347	325	347	0.96
7	12	5e-07	3.6e-05	25.4	2.0	1	23	353	375	353	375	0.97
8	12	9.7e-06	0.0007	21.4	1.7	2	23	382	403	381	403	0.96
9	12	0.00021	0.016	17.1	0.7	3	23	411	431	409	431	0.96
10	12	3.2e-05	0.0023	19.7	5.7	1	23	437	459	437	459	0.98
11	12	5.5e-06	0.0004	22.1	0.3	1	23	465	487	465	487	0.98
12	12	5.4e-05	0.0039	19.0	5.7	1	23	493	515	493	516	0.96

Sequence Information

Coding Sequence: atgacaGAAATTAGTATCACTTATcaggattttacaaatatatgtcGAATTTGTTTAAAAGCTGCTGATGATCTTCATAACTTTATTCAGTTAAATATGGCAgacttatttaaattacttacaAATATTGAAATTACACAGCAGGACATGTTTCCCAAAAATGTATGTGGAATTTGTAAAAACCACCTAAGCAGTATATGtttatttatcgaaaaatgtaaaaagaatGATATGTACCTTAAAAAGGTttatctgaaagaaataaatgatgCATGTGATTCAGATAACTGTGACTTCGAACAAAATGATGAGTCGCTGATCAAAACTCAATCTGAagtgaaggaaaaaaataatttaatacttaaaCCCTTGAAGAGCGAAATTAAGTTGAAAGGAACAAAATCTAATGAACGGTCATGCTCTAATTGTGGAGTACACTTAAACCAAGGAGGTATAAAGAAGCATTACAGGCTGAATCCAAACTGTAGGCCGGACGATTATAAATGTCCAATGTGTGAAAAATCATTTTATCCAAGAAATAAACTAATAATTCATTTGAAATCACATAAAAAGAATACACCTTACAAATGTcctgaatgtttaaaaaaatttgtgtttgCGGAAAATTTAAGAAGGCATGCTCTTACACACAAAGGTGTGAAGCCTTTTATTTGCGAAATTTGTGAAAAAGGTTTTTTAAGGAAGAGGTCATTAGATGAACATCGAAATTTCCATACTGGAAAAACGCCttatatatgtgtttattgcGGAAACGGTTTTAAACGGTTGGTGGATCATGCCGCCCACATTTATCACATTCACAGCGATAACATCGACAAAATTCCAAAGCACAAAAGGAAATATACTGAAAAAAGAGTTCATTTGAAATTAGAATGCAAAATTTGCGGCAAAATTTTCGCCAGCAGATCCGGCTATGCCAATCACCAACTAATCCATAAAGGAGTGAAAAAATTCTTATGCAACATTTGTGGAAGGAAGTTCATAACGAATCCAACACTACAGAGTCACATTAGAACCCACACTGGCGAAAAACCCTTTGAATGTAAGGAGTGCGGAAAAGTTTTTAGCCAAAGAAACTCGTTAAATGTTCACATGTCTCACCACGTCACCGATAAGTCTTTAAACTGTCCCCATTGTGATAAAAGGTATTACACAAAAAGTGGTTTAAATAATCACGTACTAACGCATTCCACCGATAAACTTCTGGACTGCCCTGACTGCAATAAACAGTTTTATCAAGAAACCGCTTTACACAATCATATTTTACAGCACAAGGGTGAAAAACCGCATAGATGCCACCTGTGTGCCAAATCATTCATGTCTCCTTCCCATTTAAACGTCCATTTGAGGACTCATAGCGGAGAAAAGCCTTACACGTGTTCTATTTGTGGAAAGCAACTTGCCCAACCTCAAACATTAAAAGTGCATATGAGGCAACATACTGGTGAGACACCTTATACCTGTTCCGTTTGCGAAAAAGGGTTTCACGATTCCAGTAATCTCAAAAGACATTTTAACAGACATCACAGTACCGAAAATAACTCTGGTACAAATGAAGTAAAGAAACGATAA
Protein Sequence: MTEISITYQDFTNICRICLKAADDLHNFIQLNMADLFKLLTNIEITQQDMFPKNVCGICKNHLSSICLFIEKCKKNDMYLKKVYLKEINDACDSDNCDFEQNDESLIKTQSEVKEKNNLILKPLKSEIKLKGTKSNERSCSNCGVHLNQGGIKKHYRLNPNCRPDDYKCPMCEKSFYPRNKLIIHLKSHKKNTPYKCPECLKKFVFAENLRRHALTHKGVKPFICEICEKGFLRKRSLDEHRNFHTGKTPYICVYCGNGFKRLVDHAAHIYHIHSDNIDKIPKHKRKYTEKRVHLKLECKICGKIFASRSGYANHQLIHKGVKKFLCNICGRKFITNPTLQSHIRTHTGEKPFECKECGKVFSQRNSLNVHMSHHVTDKSLNCPHCDKRYYTKSGLNNHVLTHSTDKLLDCPDCNKQFYQETALHNHILQHKGEKPHRCHLCAKSFMSPSHLNVHLRTHSGEKPYTCSICGKQLAQPQTLKVHMRQHTGETPYTCSVCEKGFHDSSNLKRHFNRHHSTENNSGTNEVKKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110779;
90% Identity: -
80% Identity: -