Malt042281.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:38357111-38373281[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.004 0.29 13.1 4.3 1 23 2 24 2 24 0.98
2 27 0.002 0.14 14.1 0.5 1 23 33 55 33 55 0.98
3 27 0.2 15 7.8 2.4 1 23 64 86 64 86 0.98
4 27 0.1 7.4 8.7 4.5 1 23 95 117 95 117 0.98
5 27 4.8 3.5e+02 3.4 5.3 1 23 126 148 126 148 0.97
6 27 0.0002 0.015 17.2 1.5 1 23 157 179 157 179 0.99
7 27 0.011 0.76 11.8 0.8 1 23 188 210 188 210 0.97
8 27 0.006 0.44 12.6 2.9 1 23 219 241 219 241 0.99
9 27 0.027 2 10.5 7.9 1 23 250 272 250 272 0.98
10 27 0.033 2.4 10.2 3.0 1 23 281 303 281 303 0.99
11 27 0.0004 0.029 16.3 0.9 1 23 312 334 312 334 0.99
12 27 0.00084 0.061 15.3 1.1 1 23 343 365 343 365 0.98
13 27 0.01 0.76 11.8 6.1 1 23 374 396 374 396 0.99
14 27 2.5 1.8e+02 4.3 2.0 1 13 405 417 405 421 0.86
15 27 0.017 1.3 11.1 3.9 1 23 577 599 577 599 0.99
16 27 0.0007 0.051 15.5 1.4 1 23 608 630 608 630 0.99
17 27 0.11 8.2 8.6 1.9 1 23 639 661 639 661 0.98
18 27 0.2 15 7.8 2.3 1 23 670 692 670 692 0.98
19 27 2.4e-05 0.0017 20.1 1.1 1 23 701 723 701 723 0.99
20 27 0.05 3.6 9.7 4.9 1 23 732 754 732 754 0.99
21 27 0.0026 0.19 13.7 0.7 1 23 763 785 763 785 0.99
22 27 0.0024 0.18 13.8 2.6 1 23 794 816 794 816 0.98
23 27 0.022 1.6 10.8 5.5 1 23 825 847 825 847 0.99
24 27 0.0037 0.27 13.2 4.9 1 23 856 878 856 878 0.98
25 27 0.0026 0.19 13.7 1.3 1 23 887 909 887 909 0.98
26 27 0.00019 0.014 17.3 1.8 1 23 918 940 918 940 0.98
27 27 0.001 0.073 15.0 3.3 1 23 949 971 949 971 0.99

Sequence Information

Coding Sequence
atgtacaagtgtgatacaTGTACTTATCAAACTAAATATAAGGCTCACCTGAAAAATCATCAGTTGATACACAGAGATCCTTCTGAAATCCAGATGTACAGATGTAATCTGTGTGATTATGAAGCTAAACGTAAAGATGTGCTGAGAAATCATCAGTTAATACACAAGAACTCTTCTGAAATCCAGATGTACAAATGTGGTAAATGTACTTTTGAATCCAAATATAAGAGAAATGTGAAAGACCATCAGTTATTGCACAAGGACCCTTCTGAAATACAAATGTACATGTGTGGTACTTGcacttttaaaagtaaatataagcGTCACCTGAAGGATCACCTGATAACACACAGagacccttctgaaatccagATGTATAGATGTACTCTGTGTGATTGTGAAGCTAAATTTAAGCATATTCTGAAAAATCATCAGTTAACGCACATGAATACTTTTGAAATCCGAATGTATAAGTGTGATAAATGTGAATACCAGAGCAAACGTAAGGGTGAGCTAAGAGTTCATcaattaacacacaaagacccttccGGAGTCcagatgtacaaatgtgatgcatgtgattatgaaactaaatataaaaatgctcTGAAAACCCATCAGATAttacacaaagacccttctgaaatccatATGTACAAATGTGGTACTTGTACTTACGAAACTAAATATAAGAGTCGCCTAAACAATCATCAATTAACgcacaaagacccttctgaaataCAAATGTACATGTGTCATACTTGcacttttaaaagtaaatataagaGTCACCTGAAAGATCACCTGATgacacacaaagacccttctgaaatccaaatgtacagatGTAATCTATGTGATTATGAAGCTAAATTTAAACATGTTCTGAAAAATCATCAGTTAACGCACATGAACCCTTCTCAGATACGAATGTATAAGTGTGATAGATGTGAATACCGGAGTAAACGTAAGGGTGAGCTAATAGTTCATCAGTTAACACACAAACACCCTTCTGAAGTTCAGATGTACAGATGTGATGAGTGTGATTAcgaaactaaatataagaaTGCTCTGAAAACCCATCAGTTATtgcacaaagacccttctgaaatccatatgtacaaatgtgataaaTGTActtataaaactaaatataagagTCACGTAAAGGATCACCAGTTAACACACAAAGATCCTTCTAAAATCCAGATGTACAGATGCGATGATTGTGGTTATAAAACTAAACACTGCATTAATATCACAGGCTATTTAAATTTCGAAGAAGTAGGAAAAGTCACAAgggaaattttagaaattgttttgcCTGAACTGaaCATCGGTGCTGCCAAGGATCCTGTGATATGCGGATCATCTTTTAATATGGTTCCTACTCATggcagttttttaaaaaactacccGGAAGCACAAGAAGATGAGAAAAGTGCCGATAAACTGCCTTATATTAAAACCGAAGAGATTGAAATTAAACTGGAAGATATTCAAGATCCACAGGAATATGAAAACTTTAATGACCCTTATATTAAATCCGAAGAAACGGAAATAAAGTTAGAGGAAGGAGGTCAAGATAAggCTTCATCTTCACACAATTTAGATGAAGGTCAAAACATAAAGAAGGACATTTCTGAACATATAGAAGAAACAGAATATGAATATTTGGTAAAATGTGAAACTGAGGTTGAAGGAGACAAATGCAAAACTTTGTTGATGTATAAGTGTGATACTTGCACctatgaaactaaatataagacTCGCCTGAAAAATCATCAATTAACACACAAAGATTGTTCAGAAATTCAGATGTACAAGTGTAACGcatgtgattataaaactaaaCGAAAGGGCGATCTTAGCATGCATCAGTTAACACACAGAGATCCTTGTGAAgttcaaatgtacaaatgtgatatttGTACATACGAATCCAAATATAAGAAAACTATGAAAGGTCATCAGTTATTGCACAAGAACCCTTCGGAAATCCATATGTACAATTGTGATACTTgtacatataaaacaaaatataagggTATCCTGAAAAATCATCAATTAACTCACAAAAGTTCTTCTGAAATCCAGATGTACAGATGTAATGTGTGTGACTATGAAGCTAAACGTAAGGATAATCTGAAAAGCCATCAGTTAACGCACATGAACCCTTCTGAAATCcagatgtacaaatgtgatatttgtacttatgaaactaaatataagagATGCCTGAATTATCATCAATTAATGCACAGAGATCCTTCTGAAATCCGGATGTACAGATGTAACATATGTGATTACGAAGCCAAACGTAAGGATATTCTGAAAAATCATCAGTTAACGCACATGAAACCTTCTGAAATCCAGATGTACACGTGTGACATATGTAGTTTTGCGACTAAACATAAGATTGGTTTGAAGAGGCACCAATTAAAGCACAAAAACCTTTCagaaattcaaatgtacaaatgcGATGTATGTACTTTCCAATCTAAACATAGAAGCTATTTGAAGTATCATCAGTTAACACACAAAAACTTTTCTGAAgtccaaatgtacaaatgtgatatttGTCATTATGAAACTAAACACAAGAACGCTTTGAAAACTCATCAGTTATTGCACAAAGATGCTTCTGAAATCCTTATGTACAACTGTGATACTTGTAATTATCAAACTAAATCAAAGGGTTATCTTAAAGAGCACCAGTTGATACACAGAGACCCTTCTGAAATCCCAATGTACAGGTGTGATGAATGTGATTATGAAACTAAACGCAAACGTGACCTAAAAAGTCATCAGTTACAGCACAGAGACCCTTCTGAAAttcaaatgtacaagtgtgatactTGTACATATGCGACTAAATATAGGAACAGTTTGAAGAAACATCAGTTAACACACAAGGACCCTTTGTAA
Protein Sequence
MYKCDTCTYQTKYKAHLKNHQLIHRDPSEIQMYRCNLCDYEAKRKDVLRNHQLIHKNSSEIQMYKCGKCTFESKYKRNVKDHQLLHKDPSEIQMYMCGTCTFKSKYKRHLKDHLITHRDPSEIQMYRCTLCDCEAKFKHILKNHQLTHMNTFEIRMYKCDKCEYQSKRKGELRVHQLTHKDPSGVQMYKCDACDYETKYKNALKTHQILHKDPSEIHMYKCGTCTYETKYKSRLNNHQLTHKDPSEIQMYMCHTCTFKSKYKSHLKDHLMTHKDPSEIQMYRCNLCDYEAKFKHVLKNHQLTHMNPSQIRMYKCDRCEYRSKRKGELIVHQLTHKHPSEVQMYRCDECDYETKYKNALKTHQLLHKDPSEIHMYKCDKCTYKTKYKSHVKDHQLTHKDPSKIQMYRCDDCGYKTKHCINITGYLNFEEVGKVTREILEIVLPELNIGAAKDPVICGSSFNMVPTHGSFLKNYPEAQEDEKSADKLPYIKTEEIEIKLEDIQDPQEYENFNDPYIKSEETEIKLEEGGQDKASSSHNLDEGQNIKKDISEHIEETEYEYLVKCETEVEGDKCKTLLMYKCDTCTYETKYKTRLKNHQLTHKDCSEIQMYKCNACDYKTKRKGDLSMHQLTHRDPCEVQMYKCDICTYESKYKKTMKGHQLLHKNPSEIHMYNCDTCTYKTKYKGILKNHQLTHKSSSEIQMYRCNVCDYEAKRKDNLKSHQLTHMNPSEIQMYKCDICTYETKYKRCLNYHQLMHRDPSEIRMYRCNICDYEAKRKDILKNHQLTHMKPSEIQMYTCDICSFATKHKIGLKRHQLKHKNLSEIQMYKCDVCTFQSKHRSYLKYHQLTHKNFSEVQMYKCDICHYETKHKNALKTHQLLHKDASEILMYNCDTCNYQTKSKGYLKEHQLIHRDPSEIPMYRCDECDYETKRKRDLKSHQLQHRDPSEIQMYKCDTCTYATKYRNSLKKHQLTHKDPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-