Malt042379.3
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:39231135-39246644[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0076 0.55 12.2 0.6 1 23 288 310 288 310 0.98 2 21 0.0045 0.33 13.0 3.4 1 23 319 341 319 341 0.99 3 21 0.001 0.075 15.0 4.4 1 23 350 372 350 372 0.98 4 21 0.00082 0.06 15.3 0.5 1 23 381 403 381 403 0.97 5 21 0.0024 0.18 13.8 4.3 1 23 412 434 412 434 0.98 6 21 0.00018 0.013 17.3 4.0 1 23 443 465 443 465 0.98 7 21 0.18 13 7.9 4.4 1 23 474 496 474 496 0.98 8 21 0.00025 0.018 16.9 1.0 1 23 505 527 505 527 0.98 9 21 0.0009 0.065 15.2 1.3 1 23 536 558 536 558 0.98 10 21 0.0004 0.029 16.3 4.7 1 23 567 589 567 589 0.98 11 21 0.00052 0.037 15.9 0.4 1 23 598 620 598 620 0.98 12 21 0.0017 0.12 14.3 2.0 1 23 629 651 629 651 0.97 13 21 0.23 17 7.6 0.3 1 23 973 995 973 995 0.97 14 21 0.0016 0.12 14.4 2.5 1 23 1004 1026 1004 1026 0.98 15 21 0.00011 0.0081 18.0 1.4 1 23 1035 1057 1035 1057 0.98 16 21 0.0013 0.095 14.6 0.8 1 23 1066 1088 1066 1088 0.97 17 21 0.037 2.7 10.1 4.0 1 23 1097 1119 1097 1119 0.98 18 21 0.00039 0.028 16.3 0.5 1 23 1128 1150 1128 1150 0.99 19 21 0.035 2.5 10.2 5.1 1 23 1159 1181 1159 1181 0.98 20 21 0.00064 0.047 15.6 0.9 1 23 1190 1212 1190 1212 0.96 21 21 0.044 3.2 9.8 2.0 1 23 1221 1243 1221 1243 0.97
Sequence Information
- Coding Sequence
- ATGCAGCCAGATAACACTTTATTTTGCCGACTATGTCTAAATACCATCAGCTCAACAAATTGCTTAATAATAGGACAAGTAGCAAAGAAGGTTTTAGAAGCTGTTTTGCCAAATTTGaATTTAGAAGAGATACATCAACAACGAATGTGTAAAACATGTTGCTCGAAATTATTCCCTGCCTTTAATTTTAAGTCGGCATGTTTGGGCACTGAAGATCTTTTGACTTCTTATGTTAATGCCAATAAAGTGTCAGTGATCAACTTGAAAGAAATTTATCTAACGGTGAATGTAAATGTTCACTTAAGGGACATATTGGAAAATCAAAGAATTTGTCGATTGTGCCTTCAATTGGTAACATGCAGATTGGTGTCGCTAAATGAAGTGGATAATGACATAATTGATACATATATACCTCAAGTAgACATCAATGCCACCAACGATCCTGTTATATGCGGATCATGTTTTGATTCGCTTCGTATTCATGGCGATTTTGTAAAGAACTGCCTTAGAGCACAGGAAAAAAGTAACAGTGCTGAAAAAGAACCTAATATTAAGACTGAAGAGGTAGATATTAAACTAGAAGACTGTTATGATGTGCAGGAGACATATAAACACGATAATCAGATTTATGTTAAAACTGAAGAGGTGGAAATAAAGCCAGAGGAAAGAGACCAACATAATGATTCCTCTTCAGATAACATAGAAGAAACAAACAGTGAATGTGAAAGCAAAGTTCAAATAAACAAAGACGGAACTCCTTTGTATTTACCGTCATATAAGAATAGATATAAAACACAATTTGAAAgtgatttaaaatacaaaaataacctaaaattgGTCAACTCTTCTGCAATTCAAATGTACACGTGTGATGTATGTGATTATGAATCTAAATACAAGAGTGCTGTGAAAAGTCACCAGTTATTGCACAAAGACCcatctgaaatccaaatgtacaaatgtgacaCTTGTACTTATCAATCGAAGTATAAGAGCTATCTGAAAAATCATCTGTTAATGCACAAGGACCCTTCGCAAGTCCAAATGTACACATGTAATACATGTGGCTACAAAACTAAACAtaagagatatttgaaaattcatcagttaatACACAAAGACCtttctgaaatccaaatgtacaggtGTGATGTATGCCCTTATGAAACTAATCGTAAGGGTAATCTGAAAAGTCATAAGTTATGGCATAAAGATTCTTCagaaattcaaatgtacaaatgtaacactTGTACTTATGAGACTAAGTATAAGAGTCACTTGAAAAATCATGTATTAATACACAAGGACCCTTCTGAAGGTGAAACATACAGGTGTGATGTATGTGATTATGAAACTAAACGCAAGAGTTATCTGAAACATCATCAGTTGTCACACAAAGACTCTTCAGAAACCCAGATGTACAAATGCGATTTTTGTActtatgaaactaaatatagAAGCTGTTTGAGAAGTCATGAATTAGTACACAAAGACCCTTcggaaatccaaatgtacagatGTAATGAATGTAATTACGAAACTAAACGCAAgGCTGCCTTGAAAAGCCATCAATTATtgcacaaagacccttctgaaattgtaatgtacaaatgtgatactTGTGCTTATGAAACGAAGTACAAGAGTAACCTGAAAAATCACCTGTTAATACACAAAGACCGTTCTCAAGCCCAAATGTACACGTGTGATGTGTGTGATTATAAAAGTAAACATAAGAGTAAGCTGAAAAGACATTTACTGAGACATAAAGACCTTTCTGAAACGAAAATGTACAGGTGTGACATATGTACTTATGAAACTAAACTTTGGGGTAATCTGAAAAGGCATCAGTTATGGCACAAAGATTCTTCagaaattcaaatgtacaaatgtaacactTGCACTTATGAAACTAAGTATAAGAGTAACCTGAAAGACCACGAGTTAATTCACAAGGACCTTCTAAAATCGAAATGTACAGgtTATGTAATATTTGCCTCAAATATGATGTCACTTGAAATAAAACCAGAGAGTTTTAATAAAccgatattttgcaaattgtGCCTTAATATCATAAGTTTTGCAAATTCTGAAGTAATAGAAGAAATTGCCAAAGAGGCGTTAGAAGTTGTTTTGCCAAATCTGaacttgggagaaatacaaAAGCATCAAATGTGTAAAGTATGTCACTCAAAGTTATTTGCTgcgtttaattttaaaatgacatGTATGCATACTGAGGATAGTATTTTTCCTCATATTAATGCAGGCAATGTGTCGGTGGTAGATTTAAAAGCAGTTTATCTTAAAGTGAATGAAAATATAACTAATATGCGGCAAAATCAGAAAGTTTGTCGGTTGTGTCTTCAATTGGTAACATACGGATCTGTGTCACTTGATGAAGTCGATAAGGATATAATTGATACATATATACCTCTAGTAAACATCAATGCCACCAACGATCCTGTTATATGTGGATTATGTTTTGACTCGCTTCGTACCCATGGCAATTTTGTAAAGCACTGCCTTAAAGCACAGGAAAAATACAACAGTGGCAATAAagaaacttatattaaaattgaagaGGTTGATATTAAACTCGAAGACGATAATGATCCGCAGGAGACATATAAATACATTGATAATCATATTTATGTGAAAACTGAAGAGATGGAAAAAAAGTCGGAGAAAAGGGATCAAGATCATTGTTCCTCTTCACATAATTTAAATGAAGAAACATTTCAAACTAAAAAGGAGCATATTTCTGAATATAGAGAAGAAACAAATAATGATTGTGAGGCTAAAGTTCAGCTAAACAAAGATGAAACTACTTTGCATGTATATAAAAGAAAGTTTAAAGGTGACTTCAAACACAAAAATAGTCGAAAACTGGGAAAGTCTACTGCCATTAAAATGTACGCTTGTGATGCGTGTGAttataaatctaaatataaGGGTGCCGTGAAAAGCCATCAATTATCGCACAAGGACCCCTCTGAAAttgaaatgtacaaatgtgatactTGTACTTATGAAACTAAGTATAAGAGTTACCTGAAAAATCATTTGTTAATACACAAGGACCCTTCTCAAGTCCAAATGTACACGTGTGAtgtgtgtgattataaaactaaaCAGAAGAGTGGGCTGAAAAGTCATCTATTAAGACACAAAAACCTTTCTGAAACCAAAATGTACACGTGTGATGCATGCAATTATGAAACTAAACGTAAGGGTAATCTGAAAAGTCATCAGTTATGGCACAAAGACTCTTCAGAAACTCAAATGTACAAATGCAATACTTGCACTTATgagactaagtacaaaaatcacCTGAAAGATCACGAGTTAGTACACAAGGACCCTTCTAAAATCGAAATCTACAAGTGTGATGCATGTGATTACGAAGCTAAACGCAAGGGGGAGCTTAAACGTCATCAATTgacacacaaagacccttcagaaatccaaatgtacaaatgcgaATTTTGTActtatgaaactaaatatagAAGCTGTTTAAGAAACCATCAATTAATACACAAAGACCCTTCGGAAAttcaaatgtacaagtgtgatgcGTGTGATTATGAAACTAAACGCAAGGATAATCTGAAAAATCATCAGGTATTGCACAAAGGCCCTTCAGAAAccaaaatgtacaagtgtgatacgTGTAGTTATGTAACTAAGTATAAGAAGAGTATCAAAAATCATCAGGTGATACATGCAAATACTTCCACAACAAGATTGTGA
- Protein Sequence
- MQPDNTLFCRLCLNTISSTNCLIIGQVAKKVLEAVLPNLNLEEIHQQRMCKTCCSKLFPAFNFKSACLGTEDLLTSYVNANKVSVINLKEIYLTVNVNVHLRDILENQRICRLCLQLVTCRLVSLNEVDNDIIDTYIPQVDINATNDPVICGSCFDSLRIHGDFVKNCLRAQEKSNSAEKEPNIKTEEVDIKLEDCYDVQETYKHDNQIYVKTEEVEIKPEERDQHNDSSSDNIEETNSECESKVQINKDGTPLYLPSYKNRYKTQFESDLKYKNNLKLVNSSAIQMYTCDVCDYESKYKSAVKSHQLLHKDPSEIQMYKCDTCTYQSKYKSYLKNHLLMHKDPSQVQMYTCNTCGYKTKHKRYLKIHQLIHKDLSEIQMYRCDVCPYETNRKGNLKSHKLWHKDSSEIQMYKCNTCTYETKYKSHLKNHVLIHKDPSEGETYRCDVCDYETKRKSYLKHHQLSHKDSSETQMYKCDFCTYETKYRSCLRSHELVHKDPSEIQMYRCNECNYETKRKAALKSHQLLHKDPSEIVMYKCDTCAYETKYKSNLKNHLLIHKDRSQAQMYTCDVCDYKSKHKSKLKRHLLRHKDLSETKMYRCDICTYETKLWGNLKRHQLWHKDSSEIQMYKCNTCTYETKYKSNLKDHELIHKDLLKSKCTGYVIFASNMMSLEIKPESFNKPIFCKLCLNIISFANSEVIEEIAKEALEVVLPNLNLGEIQKHQMCKVCHSKLFAAFNFKMTCMHTEDSIFPHINAGNVSVVDLKAVYLKVNENITNMRQNQKVCRLCLQLVTYGSVSLDEVDKDIIDTYIPLVNINATNDPVICGLCFDSLRTHGNFVKHCLKAQEKYNSGNKETYIKIEEVDIKLEDDNDPQETYKYIDNHIYVKTEEMEKKSEKRDQDHCSSSHNLNEETFQTKKEHISEYREETNNDCEAKVQLNKDETTLHVYKRKFKGDFKHKNSRKLGKSTAIKMYACDACDYKSKYKGAVKSHQLSHKDPSEIEMYKCDTCTYETKYKSYLKNHLLIHKDPSQVQMYTCDVCDYKTKQKSGLKSHLLRHKNLSETKMYTCDACNYETKRKGNLKSHQLWHKDSSETQMYKCNTCTYETKYKNHLKDHELVHKDPSKIEIYKCDACDYEAKRKGELKRHQLTHKDPSEIQMYKCEFCTYETKYRSCLRNHQLIHKDPSEIQMYKCDACDYETKRKDNLKNHQVLHKGPSETKMYKCDTCSYVTKYKKSIKNHQVIHANTSTTRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -