Malt042401.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Monochamus alternatus
Gene Symbol
-
Assembly
GCA_037114965.1
Location
CM073434.1:39436373-39442315[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.00044 0.032 16.1 0.7 1 23 340 362 340 362 0.98
2 26 0.043 3.1 9.9 3.4 1 23 371 393 371 393 0.97
3 26 3.9e-06 0.00028 22.6 1.6 1 23 402 424 402 424 0.99
4 26 0.016 1.2 11.2 3.0 1 23 433 455 433 455 0.98
5 26 3.7 2.7e+02 3.8 0.5 9 23 472 486 464 486 0.85
6 26 0.0025 0.18 13.8 3.1 1 23 495 517 495 517 0.98
7 26 0.1 7.5 8.7 5.4 1 23 526 548 526 548 0.99
8 26 4.2e-06 0.00031 22.5 1.4 1 23 557 579 557 579 0.98
9 26 0.0056 0.4 12.7 3.4 1 23 588 610 588 610 0.98
10 26 0.00065 0.047 15.6 3.3 1 23 619 641 619 641 0.99
11 26 0.0026 0.19 13.7 3.6 1 23 650 672 650 672 0.99
12 26 0.17 13 8.0 8.1 1 23 681 703 681 703 0.99
13 26 0.001 0.076 15.0 4.4 1 23 712 734 712 734 0.99
14 26 0.0015 0.11 14.4 2.0 1 23 743 765 743 765 0.98
15 26 0.0019 0.13 14.2 3.7 1 23 774 796 774 796 0.98
16 26 4.9e-05 0.0036 19.1 1.0 1 23 805 827 805 827 0.98
17 26 0.0019 0.13 14.2 3.7 1 23 860 882 860 882 0.98
18 26 8.3e-05 0.006 18.4 0.6 1 23 891 913 891 913 0.98
19 26 2.2e-05 0.0016 20.2 1.3 1 23 977 999 977 999 0.98
20 26 2 1.5e+02 4.6 0.7 5 23 1036 1054 1035 1054 0.95
21 26 2.8e-05 0.002 19.9 1.3 1 23 1063 1085 1063 1085 0.99
22 26 0.0014 0.099 14.6 4.5 1 23 1094 1116 1094 1116 0.98
23 26 0.0014 0.1 14.5 3.1 1 23 1125 1147 1125 1147 0.98
24 26 8.7 6.3e+02 2.6 5.1 1 23 1156 1178 1156 1178 0.97
25 26 0.0014 0.1 14.6 4.3 1 23 1187 1209 1187 1209 0.98
26 26 1.7 1.2e+02 4.9 1.7 1 23 1218 1240 1218 1240 0.97

Sequence Information

Coding Sequence
ATGTCTTTTCAATATGTGGTTGAAAGAAAGGAAAAGCAGTCAGAATATGTTAATACAAAACTGTATTGCAGACTGTGCCTTAATATCACGACCTATACAAATTCTAAAGTAATAGAAAACGATGTGATGAACGCTTTAGAAGTTATTTTTCCCACTCTGAACTTGGAAGAAGGACGTAAAGACCTCATCTGTAAATTATGCTGCTTCAAATTATTTgctgcttttaattttaaatcggCATGTATGGATACAGAGCAAATTATTTCTTGTCATATTAATGCCAGTAATGTGTCAGTGATCGACTTGAAAGAAGTTTACGTAAAGTTGAATGAAACTATTCAGTTGACTGATATATTAgaaaatcagaaaatttgttgtttgtgTCTTCAACTGGTAACATACGGATTCAAGTCACTAAATAAGGTCGAGAATGACGTAATCGGTACATATTTGCCTCGAATAaACATCAGTGCTACCAAGAACCCTGTTATATGCGAACCATGTTTTAATTCCCTTAATATCTACGACGGATTTGTAAAGAGTTGCCTTGAAGCACAGGAAAAATACAAAAGTGGCGATAAACAGTCTGTTATTAAAACTGAAGAGATTGAAATTAAGCTGAAAGATAGTGAGGACACCCAGGAGCAGTATCGAAGCATTGACAGgtcttatattaaatttgaaggGACGGAAATAAAACTCGAAGATCAAACTGGCCAGAAGGAATATAAAAACAGTGATgagcaaaattatattaaacccgAAGAAATTGAGATAAAGTCAGAGGGAGGAGATCAAGATAAtGATTCCTCATACAATGTGGATGAATCAACAATTGACAATAAAAAGAagcatatttttaaagataatgGAGAAAGAAAAGATAAATATATGGTTGAAGTTCAATTAAACAAATGCGAAATTCCATCGTCTGTATCATCATATAAGAATAAATATGAAGCTTTTTTGAAACACAAAAGTTTTACAAATCGGAAGCATTCTTCGGAAATTCAAATCTTCAGGTGCGATTTATGTACTTACGGATCTATACGTAAGGGTAATCTGAAAAGGCATCAATTAATACACAAAGACAattctgaaatccaaatgtacaagtgtgatactTGTACCTATGAAAGTAAATACAAGGAGAAGCTAAAAAGACATAAGTTGTtgcacaaagacccttctgaaatccaaatgtacaggtGTGATGCATGTGATTATGTATATAAACGTAAAAGTGATCTAAAGCGTCATcaattaacacacaaagacCTTTCTGAAATCCAAACGTACAAATGTGATGcatgtgattataaaactatACATAAGCGTTATCTGAAAAGTCATCAATTAATACACAAAGACCActctgaaatccaaatgtacaagtgtgatactTATACTTATGAAACTAAACGCAAGGAGAAGCTGAAAAGACATCAGTTGCTGCACAAAGAATCTTCTGAAATTCAAATCTACAAATGTAACGATTGTAATTATCAAAGTAGATTTAAGAAATATCTGAACAATCATCAATTAATACACAAAGCTCCttctgaaattcaaatttacaaatgtaataaatgtaattatcaaagtagatttaagaaatatatGAACAATCATCAATTAAgacacaaagacccttctgaaatccaaataTACATGTGTGATGCATGTGATTTTGTATTTAAACGTAAAAGTGATCTAAAGCGTCATcaattaacacacaaagacTTTTCTGAAAGCCAAACGTACAAATGTGATGcatgtgattataaaactatACATAAGCGTTATCTGAAAAGGCATCAATTAATACACAAAGACCattctgaaatccaaatgtacaagtgtgatactTGTACTTATGAAACTAAACGCAAGGAGAAGCTGAAAAGACATCAGTTGATGCACAAAGAATCTTCTGAAATTCAAATCTACAAATGTAACGATTGTAATTATCAAAGTCGATTTAAGAAATATCTGAACAATCATCAATTAATGCACAAAGCTCCttctgaaattcaaatttacaaatgtaataaatgtaattatcaatgtagatttaagaaatacatGAACAATCATCAATTAAGACACAAATacccttctgaaatccaaatgtacaagtgtgatgcATGTGATTTTGTATTTAAACGTAAAAGTAATCTAAAGTGTCATCAGTTAACACACAAAGACTgttctgaaatccaaatgtacaagtgtgatactTGTACTTATGAAACTAAACGCAAGGAGAAGCTGATTAGACATCAGTTGTTGCACAGAGAATCTTCTGAAATTCAAATCTACAAATGCAACGATTGTAATTATCaaagtaaatttaagaaatatctaAACAAACATCAATTAatacacaaagacccttctgaaatccaaatgtacatgTGTGATGCATGTGATTATGTATCTAAACGTAAAAGTGATCTAAAGCGTCATcaattaacacacaaagacCTTTCTGAAATTCAAACGTACAAATCTAAACGCAAGGAGAAGCTGATAAGACATCAGTTGTTGCACAAAGAATCTTCTGAAATTCAAATCTACAAATGCAACGATTGTAATTATCaaagtaaatttaagaaatatctaAACAAACATCAATTAATACACAAAGACtcttctgaaatccaaatgtacataTGTGATGCTTGTGATTATGCATCTAAACGTAAAAGTGATCTAAAGCGTCATcaattaacacacaaagacCTTTCTGAAATTCAAACGTACAAATCTAAACGCAAGGAGAAGCTGATAAGACATCAGTTGTTGCACAAAGAATCttctaaaattcaaatctaCAAAGGCAACGATTGTAATTATCAAAGTAGTTTTAAGAAATTTCTAAACAATTATCAATTAttacacaaagacccttctgaaatccaaatgtacatgTGTGATGCATGTGATTATGTATCTAAACGTAAAAGTAATCTAAAGCGTCATcaattaacacacaaagacCTTTCTGAAATTCAAACGTACAAATCTAAACGCAAGGAGAAGCTGATAAGACATCAGTTGTTGCACAAAGAATCTTCTGAAATTCAAATCTACAAAGGCAACGATTGTAATTATCAAAGTAGTTTTAAGAAATTTCTAAACAATCATCAATTAatacacaaagacccttctgaaatccaaatgtacaggtGTGATGCATGTGATTATGTATCTAAACGTAAAAGTGATCTAAAGCGTCATcaattaacacacaaagacCTTTCTGAAATCCAAACGTACAAATGTGAAacatgtgattataaaactatACATAAGCGTTATCTGAAAAGGCATCAATTAATACACAAAGACCATTCTGAAATCCAAGTGTACAAGTGTGATACTTGTACTTATGAAACTAAACGCAAGGAGAAGCTGAAAAGACATCAGTTGCTGCACAAAGAATCTTCTGAAATTCAAATCTACAAATGTATCCATTGTAATTATCAAAGtagatttaagaaatatatGAACAATCATCAATTAATACACAAAGACCCTtatgaaatccaaatgtacagatGTGATGCATGTGATTTTGTATTTAAACGTAAAAGTAATCTAAAGTGTCATCAGttaacacacaaagacccttctgaaatccaaatgtacaagtgttATATATGTAACTTTGAATCTAGATATAAGAATCGTGTGAAAACTCATGTGTTAATACACAGAGTCCTCATAATTCCAAATGTATGA
Protein Sequence
MSFQYVVERKEKQSEYVNTKLYCRLCLNITTYTNSKVIENDVMNALEVIFPTLNLEEGRKDLICKLCCFKLFAAFNFKSACMDTEQIISCHINASNVSVIDLKEVYVKLNETIQLTDILENQKICCLCLQLVTYGFKSLNKVENDVIGTYLPRINISATKNPVICEPCFNSLNIYDGFVKSCLEAQEKYKSGDKQSVIKTEEIEIKLKDSEDTQEQYRSIDRSYIKFEGTEIKLEDQTGQKEYKNSDEQNYIKPEEIEIKSEGGDQDNDSSYNVDESTIDNKKKHIFKDNGERKDKYMVEVQLNKCEIPSSVSSYKNKYEAFLKHKSFTNRKHSSEIQIFRCDLCTYGSIRKGNLKRHQLIHKDNSEIQMYKCDTCTYESKYKEKLKRHKLLHKDPSEIQMYRCDACDYVYKRKSDLKRHQLTHKDLSEIQTYKCDACDYKTIHKRYLKSHQLIHKDHSEIQMYKCDTYTYETKRKEKLKRHQLLHKESSEIQIYKCNDCNYQSRFKKYLNNHQLIHKAPSEIQIYKCNKCNYQSRFKKYMNNHQLRHKDPSEIQIYMCDACDFVFKRKSDLKRHQLTHKDFSESQTYKCDACDYKTIHKRYLKRHQLIHKDHSEIQMYKCDTCTYETKRKEKLKRHQLMHKESSEIQIYKCNDCNYQSRFKKYLNNHQLMHKAPSEIQIYKCNKCNYQCRFKKYMNNHQLRHKYPSEIQMYKCDACDFVFKRKSNLKCHQLTHKDCSEIQMYKCDTCTYETKRKEKLIRHQLLHRESSEIQIYKCNDCNYQSKFKKYLNKHQLIHKDPSEIQMYMCDACDYVSKRKSDLKRHQLTHKDLSEIQTYKSKRKEKLIRHQLLHKESSEIQIYKCNDCNYQSKFKKYLNKHQLIHKDSSEIQMYICDACDYASKRKSDLKRHQLTHKDLSEIQTYKSKRKEKLIRHQLLHKESSKIQIYKGNDCNYQSSFKKFLNNYQLLHKDPSEIQMYMCDACDYVSKRKSNLKRHQLTHKDLSEIQTYKSKRKEKLIRHQLLHKESSEIQIYKGNDCNYQSSFKKFLNNHQLIHKDPSEIQMYRCDACDYVSKRKSDLKRHQLTHKDLSEIQTYKCETCDYKTIHKRYLKRHQLIHKDHSEIQVYKCDTCTYETKRKEKLKRHQLLHKESSEIQIYKCIHCNYQSRFKKYMNNHQLIHKDPYEIQMYRCDACDFVFKRKSNLKCHQLTHKDPSEIQMYKCYICNFESRYKNRVKTHVLIHRVLIIPNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-