Malt000232.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073426.1:3588631-3609738[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.02 1.5 10.9 0.2 2 23 76 97 75 97 0.95 2 34 0.1 7.6 8.7 1.4 1 23 103 125 103 125 0.98 3 34 0.0069 0.5 12.4 0.4 1 23 131 153 131 153 0.92 4 34 0.016 1.1 11.3 4.6 1 23 159 182 159 182 0.95 5 34 0.00053 0.039 15.9 3.2 1 23 193 216 193 216 0.97 6 34 0.00049 0.036 16.0 0.7 3 23 225 245 223 245 0.97 7 34 7.3e-06 0.00053 21.8 3.9 1 23 251 273 251 273 0.98 8 34 0.062 4.5 9.4 1.3 3 23 281 301 279 301 0.93 9 34 2.4 1.8e+02 4.4 1.2 2 21 389 408 388 410 0.91 10 34 1.2 83 5.4 5.4 1 23 416 438 416 438 0.98 11 34 0.0011 0.079 14.9 0.8 1 23 444 466 444 466 0.95 12 34 0.00011 0.0077 18.1 3.7 1 23 472 495 472 495 0.95 13 34 0.1 7.6 8.7 3.2 1 23 507 530 507 530 0.91 14 34 0.0046 0.33 12.9 0.8 3 23 539 559 537 559 0.97 15 34 0.0013 0.091 14.7 2.7 1 23 565 587 565 587 0.96 16 34 6.5e-05 0.0047 18.8 0.3 1 23 593 615 593 615 0.98 17 34 0.17 12 8.0 0.1 2 23 692 713 691 713 0.95 18 34 0.48 35 6.6 4.0 1 23 719 741 719 741 0.98 19 34 0.028 2 10.5 2.5 1 23 747 769 747 769 0.95 20 34 0.00011 0.0077 18.1 4.0 1 23 775 798 775 798 0.98 21 34 0.00092 0.067 15.1 2.5 1 23 810 833 810 833 0.95 22 34 0.0068 0.5 12.4 1.3 3 23 844 864 843 864 0.99 23 34 2.2e-06 0.00016 23.4 1.9 1 23 870 892 870 892 0.96 24 34 4.5e-05 0.0033 19.3 0.5 1 23 898 920 898 920 0.98 25 34 0.6 44 6.3 0.4 3 22 931 950 930 950 0.94 26 34 0.69 50 6.1 0.5 2 20 1004 1022 1003 1025 0.89 27 34 0.49 36 6.6 4.1 1 23 1031 1053 1031 1053 0.98 28 34 0.14 10 8.3 1.2 1 11 1059 1069 1059 1081 0.79 29 34 0.0014 0.099 14.6 3.0 1 23 1087 1110 1087 1110 0.97 30 34 0.0048 0.34 12.9 1.5 1 23 1122 1145 1122 1146 0.96 31 34 0.21 15 7.7 1.0 3 23 1156 1176 1154 1176 0.96 32 34 0.00039 0.029 16.3 0.2 1 23 1182 1204 1182 1204 0.98 33 34 1.2e-05 0.00086 21.1 4.3 1 23 1210 1232 1210 1232 0.99 34 34 0.0038 0.27 13.2 0.0 2 21 1239 1258 1239 1259 0.94
Sequence Information
- Coding Sequence
- ATGCTGAGAACTGAAAAGCAAGGCAGCATATTCCTTCCCGATAGAAGTCATAACGTTCAAGAACCTCATTCCATTCCACACCTTCCAGATAGGAGCATACCAAACGCAATTTTCAGGCAACTGTGGACACATACACCTGAGAAGAACAGATCTCGTCGCAAGAGCTCGCACCCTAGGAAAATAGGTTCGGATCATCCTCCTCTGGTGCAACTAGAGGAACCAGTCCAATGCGACAAGTGCGAGGCGTCTTTCACTAATAACGTAGACTTTGCCCTTCACTCGATCAAGCACAACGAAGACGAAAGATACACTTGCCACCTGTGCAGCTACAAGATCCAGTCCAGGTACGCCTTGGAGATGCACGTGAGGGCCCATGAAGGTACCACCAAGTACAAGTGCGAGATCTGCGACAAGGCCTTCGCAGTCAGCAACCTGGCAAAGCAGCATAAGTTCCTCCACACGGGAGAGAGGCCGTTCCAGTGCGAAATTTGCGGGAAGCACTACTTCTCCTCCAACAAGCTAAGTTCTCATCGTCACAACGCGCACTACGAAGCCATTACAGGTTTTCCTTTAAGCTACGATTGTACAGAATGCGGGAAACATTACACCACTTCTCTTGGTTTGAAGAAACACAAGCTGACTAAGCACGAGAAGGCGGACCTATCGGTTATATGCGAAACGTGTGGGAAGAGGCTTTCTAGTAAAGAGAAATTGAAATACCACACGAGAATCCACACAGGGTTTAAACCTCACACATGCCACATATGTCCCAAGGCTTTTTCCAAGAAGGAACATCTAGTGGAGCATATCCGTATACACACTGGAGAAAAACCTTTTCTGTGTAAATGCTGCGGGAAAGGATTTGCTCAGAGGACTCCTTTGAAGGTTCACGAAAAGATCCATTCGCGGGATAATCCTCTCTTAAGGAGTCTTATAAATGTCGAAGGTCCTACGGAgtTTACCACGTTAAAGAACGAAGAACGTAGTGTTATCAATTCGAATGAAAGCTCAACTcttagcaaaaataaaagaggTAGAAAAAAGGGAACAAAAACCCAAGACTATACAAAACCGTCTAAGAGAAAAGCGAAGAAAATCAAAAGCGACAAACCCAAGAGGGTGATCGTGAGCAACCCCCCTCCCCTCCAACTAGACGAACCCTTGAAATGTGAAAAGTGCCCTGCCTCTTACATGAACAACGTGGACTTTGCCCTTCACTCGCGATGTCACAGCGACGATGGAAAATACAGTTGTCACCTGTGCAAGTACCGCAACGCGTCCAAGTACCACTTCGAAATGCACGTCAGGGTACACGAAGGTACCACCAAGTTCAAGTGCGAGATCTGCGGAAAGGCGTTCGCTGTACGTTCACACGCTGTGGAACACAAGAACTTCCACACCGGAGAAAAACCCTTCCAGTGCGAGATATGCGGGAAACACTTCACCACTTCCAACCAGATGACCGCTCATCGCCACAACGTCCACTACGAAATTATAAACGGCGGTCCCATCGTCAAATACGACTGCACCATCTGCAACAAGCATTACCAGACCTCCCTTGGCCTAAAGAAGCACAACGACCGTAAGCATATGAAGGTAGACTTCTCGGTGATCTGCGAGACTTGTGGGAAGAGGTTGTCCAGCAGAGAGAAGTTGAAGTTCCACATAAGGACTCACACTGGCTTTAGACCGCACGCTTGCCATTTGTGCGCGAAGAAGTTTTCCAAGAAGGAGCAACTTGTGGAACACGTGCGCATTCACACGGGAGAAAAACCGTACGTTTGTAAGTTTTGCGGGAAAGGATTCGCCCAACGGACGCCACTGAAAGTACACGAGAGGATACACACCGGAGAACGCCCTAACAAGGGAACCAATTTAACCACTGTGAAAGAGGAACCGATAGATGTTGAGATTAAGAAAGGCAGACCACGAAGAAGAAAGTCCACAAAGACTAAAGCCCAGCAAGGCGGCAAGGAGTCCAAAGCCGAAAAAAGGAAACGTTCCAGGAAAAGCGACAGTCCTAAGAAAATTGTTGTCAGTCACCCTCCTCCCATGCAACTGGACGAGCCTATTCAATGTGACATGTGCAGCGCATCGTATACGAACAACGTAGACTACGCTCTTCATTCTCTCAGTCACAGCGAAGACAACAAATATACGTGCCATCTTTGCAACTACCGAAACGGGTCCAAGTACCACCTGGAGATGCACGTCAGAGCCCATGAAGGTACCACCAAGTTCAAATGCGAGATCTGCTCGAAGTCTTTCACTATAAGCACTCATGCCATCGAGCACAAGAACTTCCACACGGGAGAGAAGCCTTTCCAATGCGAAATTTGTGGGAAACACTTCATGTTCTCCTGGCATTTAGCGTCGCACCGTAGAACTTCCCACTATGAAATACTAACTGGTAAACCCCTTGTGAAATTCGACTGTACCATCTGCAAGAAACACTACGAGTCGGCTAGTGGTTTGAGGAGACACACCATAAAAAAGCACAAGCACAATGAAATAGATTTGTCAGTACTTTGCGATATATGTGGGAAGAGATTGTCCAGCAGAGAGAAACTAAAGTTCCATCTTCGAACCCACACTGGGTACAAACCCCACGCTTGTCACGTGTGCCCTAAGAGCTTCTCCAAGAAGGACCAGTTGATCGAACACATCCGTGTTCATACTGGAGAGAAGCCGTATGTGTGTAAATTGTGTGGGAAGGGATTCGCCCAGAGGACTCCTTTGAAGACACATGAGAAAACTCATTCGGGAGATAGACAGAGGAGTAATAATATATGCACTGTGTGCGGACAAGGGTTTTTGACCAAAGCGGACCTGCAATGCCACATGAGGAGTTGCGTGGTTGCCAAATTGTACCCGGCACGAAAATTAAGAAGCAAAAGAAGCAAGAAGCGAGAGCCTTACAAAAAGAGCAAAGCGTCACGTCAGCGGAAATCCCGCAGGAAAACCGAAAAACCCCTGAACGTAGAACCCATAAAACTAGAAGACCCCATCAAGTGTGAGACTTGCAGCGAAGAATTCTACACTAACATAGACTTTGCCACGCATTCCTTTGACCACAGTCGCGAAGGAAAGTACTCCTGTCACCTATGCAACTACAAGAACACCTCCAGGTACCGCCTGGAGTCCCACGTACGCATGCATGAGGGGTCGGCCAAGTACAAATGCGAAATGTGCGGCAAAGCCTTTAGAATAGGCACTCACGCTATCGAACACAAATTCTTCCACACGGGTGAAAGACCTTTCCAGTGCGAGATATGTGGGAAACACTTTATGTACTCCAGACGCCTCGCTTCCCACCGACGCAACTCCCACTACCAGCTCCTCACCGGCAAGCCCAAAACGAAGTACGACTGCGAGTTATGTGAGAAAACTTTTGAATCCCTGCCAGGTCTCAACAATCACAAGAACAAAAAGCATCACAACATCCAAGTGGACATGTCCGTGATATGCGAAATTTGCGGGAAGAAGATCTCTTGCAAGGGTAGATTAAAGTACCACTTGAGGATACACAGCGGAGACAAACCGTTTTCTTGTATGGTGTGCGCGAAGAAGTTTGCGATGAAGGATTTACTTATAGAGCACATGAGAGTTCATACGGGAGAAAAACCGTATACTTGTACATATTGTGGGAAGACATTTGCCCACAGGTCGCCATTTAGGTACCACATAAAGACTCACACAGGCGAGAAGCCAAACGTATGTCCATTGTGCGGGAAGGGGTTCATTTCAAGGGCCGGAATGAACAGCCACATCAAGAGTTGTTACAAGGCTTAA
- Protein Sequence
- MLRTEKQGSIFLPDRSHNVQEPHSIPHLPDRSIPNAIFRQLWTHTPEKNRSRRKSSHPRKIGSDHPPLVQLEEPVQCDKCEASFTNNVDFALHSIKHNEDERYTCHLCSYKIQSRYALEMHVRAHEGTTKYKCEICDKAFAVSNLAKQHKFLHTGERPFQCEICGKHYFSSNKLSSHRHNAHYEAITGFPLSYDCTECGKHYTTSLGLKKHKLTKHEKADLSVICETCGKRLSSKEKLKYHTRIHTGFKPHTCHICPKAFSKKEHLVEHIRIHTGEKPFLCKCCGKGFAQRTPLKVHEKIHSRDNPLLRSLINVEGPTEFTTLKNEERSVINSNESSTLSKNKRGRKKGTKTQDYTKPSKRKAKKIKSDKPKRVIVSNPPPLQLDEPLKCEKCPASYMNNVDFALHSRCHSDDGKYSCHLCKYRNASKYHFEMHVRVHEGTTKFKCEICGKAFAVRSHAVEHKNFHTGEKPFQCEICGKHFTTSNQMTAHRHNVHYEIINGGPIVKYDCTICNKHYQTSLGLKKHNDRKHMKVDFSVICETCGKRLSSREKLKFHIRTHTGFRPHACHLCAKKFSKKEQLVEHVRIHTGEKPYVCKFCGKGFAQRTPLKVHERIHTGERPNKGTNLTTVKEEPIDVEIKKGRPRRRKSTKTKAQQGGKESKAEKRKRSRKSDSPKKIVVSHPPPMQLDEPIQCDMCSASYTNNVDYALHSLSHSEDNKYTCHLCNYRNGSKYHLEMHVRAHEGTTKFKCEICSKSFTISTHAIEHKNFHTGEKPFQCEICGKHFMFSWHLASHRRTSHYEILTGKPLVKFDCTICKKHYESASGLRRHTIKKHKHNEIDLSVLCDICGKRLSSREKLKFHLRTHTGYKPHACHVCPKSFSKKDQLIEHIRVHTGEKPYVCKLCGKGFAQRTPLKTHEKTHSGDRQRSNNICTVCGQGFLTKADLQCHMRSCVVAKLYPARKLRSKRSKKREPYKKSKASRQRKSRRKTEKPLNVEPIKLEDPIKCETCSEEFYTNIDFATHSFDHSREGKYSCHLCNYKNTSRYRLESHVRMHEGSAKYKCEMCGKAFRIGTHAIEHKFFHTGERPFQCEICGKHFMYSRRLASHRRNSHYQLLTGKPKTKYDCELCEKTFESLPGLNNHKNKKHHNIQVDMSVICEICGKKISCKGRLKYHLRIHSGDKPFSCMVCAKKFAMKDLLIEHMRVHTGEKPYTCTYCGKTFAHRSPFRYHIKTHTGEKPNVCPLCGKGFISRAGMNSHIKSCYKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -