Malt032922.2
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073431.1:91279032-91287343[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.0035 0.25 13.3 0.1 1 23 124 147 124 147 0.97 2 25 3.2e-06 0.00023 22.9 1.2 1 23 153 175 153 175 0.97 3 25 0.00025 0.018 16.9 7.9 1 23 181 203 181 203 0.97 4 25 0.00079 0.057 15.3 0.3 1 23 209 232 209 232 0.96 5 25 0.056 4.1 9.5 0.2 1 23 244 266 244 266 0.93 6 25 2.8e-05 0.002 19.9 0.4 2 23 279 300 278 300 0.97 7 25 3.6e-05 0.0026 19.6 1.1 1 23 305 327 305 327 0.98 8 25 3.4e-07 2.5e-05 25.9 0.9 3 23 335 355 333 355 0.96 9 25 7.9e-05 0.0057 18.5 2.1 1 23 361 383 361 383 0.98 10 25 0.0032 0.23 13.4 2.3 1 23 388 411 388 411 0.98 11 25 0.00011 0.0076 18.1 1.1 2 23 639 660 638 660 0.97 12 25 0.03 2.1 10.4 4.8 1 23 665 687 665 687 0.95 13 25 9.6e-05 0.0069 18.2 3.6 1 23 693 715 693 715 0.98 14 25 0.0039 0.28 13.2 1.4 1 21 721 741 721 742 0.94 15 25 5.2e-06 0.00038 22.2 0.7 1 23 749 771 749 771 0.98 16 25 0.0063 0.46 12.5 0.1 1 23 948 971 948 971 0.96 17 25 4.5e-05 0.0032 19.3 2.7 1 23 977 999 977 999 0.98 18 25 8.8e-06 0.00063 21.5 5.3 1 23 1005 1027 1005 1027 0.98 19 25 0.00022 0.016 17.1 0.1 2 23 1034 1056 1033 1056 0.91 20 25 0.0095 0.69 11.9 3.7 1 23 1068 1090 1068 1090 0.98 21 25 0.0029 0.21 13.6 1.3 1 23 1097 1119 1097 1119 0.96 22 25 8.8e-06 0.00064 21.5 1.4 1 23 1125 1147 1125 1147 0.98 23 25 3.1e-05 0.0022 19.8 0.8 3 23 1155 1175 1153 1175 0.96 24 25 0.00015 0.011 17.6 1.9 1 23 1181 1203 1181 1203 0.99 25 25 0.054 3.9 9.6 1.1 1 23 1208 1231 1208 1231 0.98
Sequence Information
- Coding Sequence
- ATGGATAGggataatattgtgaaaatggGTGACACAGGCTTAAATGATAAAGAGAACAACTTAAGTGGCACGGTAGATACTAATGATAATAATGGTAATGGAAAAAGCAGGGAGGAAGTAGCAGAATGCATAGGAAATGAAACTAATGGTTTGAAAGAGATGACGGTAGAGTATAGCTTGGATATGGAGCATAATTTTATAGAAGTTGAAGATAAAACAATTAACGTTGAACATGcTGGGGAAAACTCCGAAGACAGTACAGATTCAGAGTATCTCccgaaaaaaagtttattatcgAATATCAAATATCAGGGTAAATATCCTCAAAAACTGCGCAAAATTAAGGTCCCAGAAGAAGAATACGGAGAGTTTCCTTGTCCGGCTTGTCAGGAAATGTTTACTACTATAAGCGCACTTGATAAACACGCAAGAATAAAACACGAGGGGTTAAAAGTTTACAGATGCAATATGTGTAACTGGGAATTTAGCAGACCCGATCATTTGAGGAGGCATGCCATCTCTCATTCTGCTTTTAAAGAACACCGTTGTCATATGTGTACTAAGAGCTTTAAGACAAGAGAAACCTTGAGTAGGCATCAAAAGTTGCACGAGAGAAGTCGTCAGTTTAAATGTGACATTTGCCAGACAATATTTAGCCGAATAGACCTCTTGGCTAATCATAGAGCCTCAAAACATGGTATTGGAGAAaagGTCATGGTCAGGAAAAAATACGAATGTCCTCTATGCAACATGAGCTTCGCAACGGAGAATTACCGAGATATACACGTCAGCAGGCACACCAGACAGTTGAACAATGAATTTTCCAATAAGTTGGTTTGTTCAGAATGCGGCCGGCGATTTCTCAGAAAGGATTATTTGATTGCTCACATGCGTAGACATCGGAAAGAGATGTTCAAGTGTAAATACTGCGAAAAAGGCTTTCCCAGACTGATAAATTTGAGAGTCCACGAAAGGTACCACACTGAAGAAAGGTCCCACTTGTGCACGATCTGTGGAAAAGGATTTGGAAGaCCATATAACTTGACAGTACACATGAGAACTCACACTAGAGAAAAACCTCATCGATGTACACACTGCGATGCGGCTTTCGTGCAAAGTAATGACCTTAGCATTCACATTCGAAGACATACAGGAGAAAGATTCCAGTGTGAGATGTGCAGTAGAAGCTTCCTCATGAAATACCAGCTGAATCAACACAAGCGGACTGTACACGGTTTGACtgtaatacaaaaacaaaaagaaacagaTGAGCCCGCACCAATCACCGTACCCTTGCCTAAGTCATTAGTGTTGGACAACATCATATTTAACGCAATGCATGCACAGCTGATGGCACAGTCTCATGTATACAAAGATGCTGTTGACCGAGTTGTCAGGGTTTGTGATGCGTGTTATGTATTAATTTGGAAAGGAATCCAAATTCCAAAAGCTTACAAAATGGAATTGGACACGCTAAATCTAACTCAGATTTGCAGAACGTGTAAATGTATGGCGCCCCAGATGCGATCACTATTCGAGAAGTACGAAAATGCACAACAAAGTCCCCGTATTGACGAGATGCTAATGGCCTGTGCATTAGTTCAGGTGAGGTGTGACGATGGTTTGCCTAAccaaatttgtcaaatatgtgTGGAACAACTCAGAAACACTTTTATTTTCAAGCGCCAAGTCGAAAGAATAGATGCTGATTTAAGAGAGtacatgaaaaatgtaaaagtcaATGAAATTAAGCTGGAACCGCAAAATTCGGATTTGATGGAACCACTAAACCCTTTAAGCAATCTTCCAAACGAACAGGCAAAAGAAAGTAACCAAGAACCGCGCAATTCTCCCGTGATTCCAAAAATTGAAATCGATGACGTCCAGAGTCAGGACAATGATGAAATGTTGCTGACCTGCTATGAATGTTCAAAAAGTTTCAGCACTTTAAAAGGGTTACGATGGCACAAACGTATCCACATTAGTAACTTACACAAATGCAGTAAATGCGATAAACAATACACTATTCTCAACCACCTGCGTCGACATGAAGAATTGCACACTCGGAAAAAAGTACACGTGTGTAAGATCTGTAATAAAACAGTTGCGAGAACGGAGCACCTCAAAAGACATCTGTTGACCCACTTGAAGGCGATACCATTTTCCTGTAATTCTTGCAACAGGGTCTTCAGCAAGGTGGGCCATTTGCGCAATCATACGCTGAAGTGTAAAAGAGACGTCGTTTTCCCGTGCGACACTTGTAATAAAGTGTTCAATCGACAGGATAGTCTCGAAGTGCATAAAAAGATGCACGATAAACAACCCAAGCTGCTTACCATCGAGAATCTCAACAATATAGAAGACTACTATCGAATCGATGACTGTTTGGAACCTCAAGTTGAAGGAACGGAGAACACGGATGAAGACAAGGTTAAGGAATTGGTTGATACAGGAGCGAACGATAAAGAAAGTGATATAAATGAGACTTCCATGGCTGGTGGGAATGATAACGATGACGTTAGTAGCATGGAGAAAGCATCAAAGTGCCTAGAAAATGAAAAGGATGATTCCAAGGAGGTGAAGGTAGAGGATAATTTGGAAATAAAGGATAGTCTAGAGGATAAAGATAAAACAATCAACATTCTATGTGCTGCCGAGGAAAACTCCAGAGACACTATGGATCCAGAATATCTCCCGAATAAAAGTGTATCACAGAAAATCAAACGTGGTCAGGCTAGGCTACGCAAACATCCTATAAAACCATCGAAAATGACGGTGCCTGGTAAGTGCAAAAGCCCGCTGAAAATCACAAAAGTAGATAATGAAGAAGAGTATAAAGAGTTTTCTTGTCCCGCTTGCCAAGAAATATTCAACACTATGAGCGCTCTCGCAAAGCATGCAAAAATACAACACGAGGGGCTGAAAGTTTATAAATGCAATGAATGCAACAAGGAATTCAGAAGAGTTAATCATTTAAACACGCATGTTATCTCACATTCTGCCGCTAAACCTTTCCGTTGTCATGTGTGTTCTAAGAGCTTTAACAGGCGAGATACCTTGAACAGACATCAAAAATTGCATGATACGAGTAATGAAGTTGAATGCGACATTTGCCAGAAAGCGTTCAGCCGATCAGACCTCTTGGTAAATCATAGGGCAGCAAAACACGGTTGTGTCAGCGGACAGAAGGAACAGAAAGATTATCAGTGTAAGGTGTGCCAAAAGACTTTCCTCTTGAAGTCCCTATTTAACAGGCACTTGAAATTCCACAACGAGCATGCCAAGAAGTTCCTGTGCTCCGAGTGTGGCCAGCGGTTTCTCAAGAAGGATTATTTCATTATTCACATGCGTAGGCATCGGGGAGAGAAGCCGTTCAAGTGTAAATACTGCGGAAAAGGTTTTCCAAGGACGACAGATTTGAGGGTCCACGAACGATACCACACTGGCGAAAAGACCCATTTGTGCACGATCTGCGGACGAGGATTCGGAAGAGGTTACGACTTGAAAGTACACATGAGAACCCACACTGGAGAAAAACCTTATCGGTGCAAGTTCTGTGATGCGGCTTTTGTGCAATGTAACGATCTTAAAGCACACGTCCGGAGACATACAGGAGAAAGATTCCAGTGTGAGTTGTGCTCTGAAAACTTCCTCAAGGAATATTTGCTGACTCAACACAAACGGACCGTTCACAGTTTGGATGTAGTTGGTAATATTCGACGCTTGCAGCCTGTCCAGAAACAGGAAAATCCCGACAAACCTACTAATAATACTTCTGCCTAA
- Protein Sequence
- MDRDNIVKMGDTGLNDKENNLSGTVDTNDNNGNGKSREEVAECIGNETNGLKEMTVEYSLDMEHNFIEVEDKTINVEHAGENSEDSTDSEYLPKKSLLSNIKYQGKYPQKLRKIKVPEEEYGEFPCPACQEMFTTISALDKHARIKHEGLKVYRCNMCNWEFSRPDHLRRHAISHSAFKEHRCHMCTKSFKTRETLSRHQKLHERSRQFKCDICQTIFSRIDLLANHRASKHGIGEKVMVRKKYECPLCNMSFATENYRDIHVSRHTRQLNNEFSNKLVCSECGRRFLRKDYLIAHMRRHRKEMFKCKYCEKGFPRLINLRVHERYHTEERSHLCTICGKGFGRPYNLTVHMRTHTREKPHRCTHCDAAFVQSNDLSIHIRRHTGERFQCEMCSRSFLMKYQLNQHKRTVHGLTVIQKQKETDEPAPITVPLPKSLVLDNIIFNAMHAQLMAQSHVYKDAVDRVVRVCDACYVLIWKGIQIPKAYKMELDTLNLTQICRTCKCMAPQMRSLFEKYENAQQSPRIDEMLMACALVQVRCDDGLPNQICQICVEQLRNTFIFKRQVERIDADLREYMKNVKVNEIKLEPQNSDLMEPLNPLSNLPNEQAKESNQEPRNSPVIPKIEIDDVQSQDNDEMLLTCYECSKSFSTLKGLRWHKRIHISNLHKCSKCDKQYTILNHLRRHEELHTRKKVHVCKICNKTVARTEHLKRHLLTHLKAIPFSCNSCNRVFSKVGHLRNHTLKCKRDVVFPCDTCNKVFNRQDSLEVHKKMHDKQPKLLTIENLNNIEDYYRIDDCLEPQVEGTENTDEDKVKELVDTGANDKESDINETSMAGGNDNDDVSSMEKASKCLENEKDDSKEVKVEDNLEIKDSLEDKDKTINILCAAEENSRDTMDPEYLPNKSVSQKIKRGQARLRKHPIKPSKMTVPGKCKSPLKITKVDNEEEYKEFSCPACQEIFNTMSALAKHAKIQHEGLKVYKCNECNKEFRRVNHLNTHVISHSAAKPFRCHVCSKSFNRRDTLNRHQKLHDTSNEVECDICQKAFSRSDLLVNHRAAKHGCVSGQKEQKDYQCKVCQKTFLLKSLFNRHLKFHNEHAKKFLCSECGQRFLKKDYFIIHMRRHRGEKPFKCKYCGKGFPRTTDLRVHERYHTGEKTHLCTICGRGFGRGYDLKVHMRTHTGEKPYRCKFCDAAFVQCNDLKAHVRRHTGERFQCELCSENFLKEYLLTQHKRTVHSLDVVGNIRRLQPVQKQENPDKPTNNTSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -