Malt000242.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- ZFX
- Assembly
- GCA_037114965.1
- Location
- CM073426.1:3664181-3672114[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 36 0.00029 0.021 16.7 1.9 3 23 28 49 27 49 0.89 2 36 0.076 5.5 9.1 3.8 1 23 54 77 54 77 0.95 3 36 0.0014 0.1 14.5 3.4 2 23 82 106 81 106 0.88 4 36 0.0033 0.24 13.4 0.2 3 23 114 135 112 135 0.95 5 36 0.0042 0.3 13.1 3.3 1 23 142 164 142 164 0.98 6 36 0.00048 0.035 16.0 0.6 2 23 174 196 173 196 0.96 7 36 6.8e-05 0.0049 18.7 2.1 1 23 203 225 203 225 0.96 8 36 2.5e-05 0.0018 20.1 0.9 1 23 231 253 231 253 0.98 9 36 1.2e-06 8.7e-05 24.2 1.2 1 23 259 281 259 281 0.98 10 36 0.0007 0.051 15.5 0.6 3 23 290 311 288 311 0.88 11 36 0.001 0.072 15.0 1.4 1 23 316 339 316 339 0.97 12 36 0.026 1.9 10.5 0.9 2 23 346 368 345 368 0.95 13 36 0.00073 0.053 15.5 0.3 1 23 374 397 374 397 0.95 14 36 0.0024 0.17 13.8 2.5 1 23 404 426 404 426 0.98 15 36 0.042 3.1 9.9 3.8 2 23 436 457 435 457 0.97 16 36 9.8e-07 7.1e-05 24.5 0.2 2 23 465 486 465 486 0.97 17 36 1.4e-05 0.001 20.9 1.1 1 23 492 514 492 514 0.98 18 36 1.5e-05 0.0011 20.8 0.3 1 21 520 540 520 541 0.96 19 36 0.00051 0.037 15.9 3.0 2 23 556 577 555 577 0.96 20 36 0.00012 0.0084 18.0 0.8 1 23 611 634 611 634 0.93 21 36 0.0028 0.2 13.6 0.6 1 19 640 658 640 663 0.95 22 36 0.0023 0.16 13.9 1.0 1 22 668 689 668 690 0.89 23 36 0.49 35 6.6 0.6 2 23 698 718 697 718 0.96 24 36 0.00073 0.053 15.5 0.3 1 23 727 748 727 748 0.97 25 36 0.0034 0.24 13.4 0.2 1 23 754 776 754 776 0.98 26 36 2.1e-05 0.0015 20.3 0.1 1 22 782 803 782 803 0.95 27 36 0.0042 0.3 13.1 0.2 2 23 812 833 811 833 0.97 28 36 0.00042 0.031 16.2 0.3 3 23 869 890 867 890 0.97 29 36 0.00011 0.0077 18.1 1.2 1 23 895 917 895 917 0.98 30 36 0.00083 0.06 15.3 0.1 1 23 953 976 953 976 0.96 31 36 0.012 0.85 11.7 0.7 1 19 982 1000 982 1001 0.97 32 36 0.021 1.5 10.9 5.8 2 21 1011 1030 1011 1032 0.94 33 36 5.1e-06 0.00037 22.2 0.3 3 23 1070 1090 1069 1090 0.98 34 36 1.8e-06 0.00013 23.7 3.8 1 23 1096 1118 1096 1118 0.99 35 36 0.00091 0.066 15.2 2.7 1 21 1124 1144 1124 1146 0.95 36 36 0.0067 0.48 12.4 1.0 1 20 1152 1171 1152 1172 0.93
Sequence Information
- Coding Sequence
- ATGGGAAGCACAGAATTCGTGCAACATGCTTATAAAACGTATATCAAgaatattttaaGCTACCTGCTGAATAGCCGCAACTGTCCAGATTGCGGGAAGAGATTCAAATCCGAATACCTTCTGCACAAGCACAAAGTATACATGCACAACGAAAAGATGTTCTCCTGTGACATCTGCAACAAGAAATTCACGCTGCTACACATGGTGAACTACCACAAGAGACTGAAGCATTTCAAAGAATATACCTGTCATTGCGACTTTTGCGGAAGGactttggaaaataaaaatgctttgagGAGACACATTAATAGCGTCCACCTCCAGAAGTATGATTACGGTTGCAGGGATTGTGAAAAAGTGTTCAGTACAAAAAGCGCCGCTGACAAACACTACCAAGTGATACATGAAGGGAAAACCATCGAATACACCTGTCAGTTTTGCAATAAGACCTACAGGAACGACACAAGTTTTAAGGAGCATGTGCAGTCACACGACCCGAACTTTGGAAAAACTAAGTTGCAATGTCAAGTTTGCTCCAGGCAATTTATAAAACGTACAGCACTTAGGGCGCATATGAACGTGAAGCACAAGAACAGGGAGGAGGTTCACATATGCGACATCTGTGGCAAAAGCCTGTGTTCTCAATCCTCGCTGGCAAATCACAGGAGGGCTCACACTGGTGAAAGACCCTTCAGTTGTCAGTTCTGCGAGAAAAGCTTCACATCCAAGCCATTGCTGCGCATTCACGTACGGGTCCATACCAAAGAAAAACCTTACTCATGCGAAGTCTGCACCAAGAGTTTTTCTCAAAGGGCAACCCTGACCATTCACATGAGGTACCACTCGGGGGAAAGGCCgaATACTAACTGTCCAGAATGCGGAAAGAAGTTTAGATCCGAAAACCTTATGCAAAGGCACAAGGTATACGTTCACGGCGATAAGATGTTCCCCTGCGACATTTGCAACAAAAAATTCACTCTTCAATACGTTTTAAATTATCACAAGAGAGTGAAGCATTTCAAAGAATATACCTGCATCTGCGACTTTTGCGGAAGGACTTGGGAAAATAAAAACTCTTTGAAAGTGCATATTAACAGCGTCCATCTCCAGACATACGACTACGATTGCAGAGATTGTGGAAAAGTATTTAATACGAAAGGCGCTGCTGACAAACACTACCAAGTAACACATGAAGGGAAAACCATCGAATACACCTGCCAGTTTTGCAACAAGATCTACAGGAACGAAACCAGCTTTAAGGATCATGTCCAATCGCACGATCCTGATTTTGGCAAGATTAAATTACAGTGTCATCTTTGCTCCAAGCAatttttaaaacgtaaatcacTTACATCGCATATTCTGACGCACAAAAACAAGAAAGAAGGGAACGTATGCGACATCTGTGGTAAGAGTCTGACCACTCAGTCCTCGCTAGCAAACCACATAAGGACTCACACTGGGGAGAGACCATTCAGTTGCCAGTTCTGCGAGAAAAGTTTCACGTCCAAGCCATTACTACGCATACACTTGCGGGTCCATACCAAAGAAAAACCATTCTCGTGCGAAGTCTGCAACAGAAGTTTCTCTCAAAAGCCAACCTTGACCATTCACATGAGGTTACCCACAACAGATCGAAATCCATCTGTGGTACAGATCGGCCTAACTTGCACGTTGTGCAACAAGACGTACCCAACGCAAGACAAATTCAGAAGACATTTCCGCAACCATCAAGAAAGAAAGTTCTTCTGTGATATGTGCTCCTTTAAAACATTGTACAAGAGCGCTTTGGAAAGCCATAAAAAGGCTGTCCACATCAAGGAAGACGTATATAACTGCGAACTGTGCGACAAGATATTTACCAATCCTTGGTGCTTGAAAAGCCACATGGGCAACGTACACTTGAAGGACTACAAGTTTAATTGTGACAAGTGTGGCAGGGGGTTCTACCAGAAAAATCAACTTATCACTCATGACGAGAACGTGCATCAAGGTATCCGCCACGCCTGTACGGTttgcaacaaaattttcaccaccAAGGCAGGGCTGAGGTTGCACTCATTCGCACACGATCCCAGTAAGAAGAAGATGGAATGCCCTGTTTGCCTTAAGGAAGTGTCTAGACGGACGTACAAAGTCCACCAGAGGAAACATTCCGGTGATGAGACCGTCGGTATGCACGTATGCGAGATATGTGGGAAAACCGTCACTTCTAGTGCTGTCAAAGGTCACATGAGGACGCATACCGGGGAAAAACCTTATTCTTGTGACATTTGCGGGAAGTCCTTGGCCAGTTCGCAGATACTAGTTACCCATAAACGTACTCATACTAAAGAACGACCGTTTATTTGTCAAGTCTGCAACAAGGCGTTCACGCAGAAACCCGCTCTGAATGTTCACATGAGGTCACTTATTGGAGATGGTAAGCAGATGACTTGTGAAATGTGTAACGAAACCTTCCAATTACCAGATGAATTCAATCAGCATCTGGCCACTCACGCACAATTACCACACATACATGCATCCAAAGAGAAGATTTCgcgaattaaaattaaagttcaGAGAAACTACGTGCCTCCGATAAAAGAAAACGGAAAATTCGGATGTACCAATTGCGGAAAAGAGTATTCTACGAAGACGTCACTTGCTGAACATTACGAAACAGCTCACGAGAGCAATCGGTACTCTTGCGAGATATGCAAAAAACTCTTTCCTACCAAGTACAAACTGAAGTTGCATCAGCTAGTACACGATCCCAATAGGAAGAAAATTGAATGTCCGGTCTGTTTAAAGCAAATCGCTCCGGTTTGGTACCGAACACAcaaaaaaatgcacaaaaacGTCGACAAAGAATTGTTTAAGTGTGATCTATGCGACAAACCGTTTGGATCTTCTATAGCCTTGAATATCCACAAGCAAAACGTTCACTTGAAGAACCATAGGTATGTCTGTGATAAATGCGGACAGAAATTTCAACACAAAGCCAGTCTGCTGTTACACGACGCGAACAAGCACCAGGATACCCCTCGAGAATGTTCTATTTGCCACAAGCTCTTCAAAACAGAAACTAGTCTTCGCAAACATCTCCGGTGTCACGACCCGAAGTTCAAAAAAACGCAGTGCCCAGTTTGTTTGAAGGTTCTCTCTGCCCGCACTGTTAAAATCCACGAAGAGATGCACGCTGTGTCAAAAGAAAGAAACGCCATCTGTGACATATGCGGGAAAACTATCGCCTACCGTTCGAACTTAAAATTGCACATGAGAACTCACACTGGCGAGAAGCCGTATTCGTGCGATAAATGTGGAAAGTGTTTCTCCAAGTCAAGCACATTGGTTGCTCACAAGCGGACGCATACGAATGAGCGACCATTCATTTGCAAAGTATGCAACAGGGGATTCACACAGAAAACTCCTCTGAAGGTTCATATGCGTTGCCATACGGGTGAAAGGCCGTATGCGTGCCAAATCTGTTCTAAAGGGTTTACCACCAGGGGATCGCTCAATGGACACAAGTGTCCTGGGCCTAGCTAA
- Protein Sequence
- MGSTEFVQHAYKTYIKNILSYLLNSRNCPDCGKRFKSEYLLHKHKVYMHNEKMFSCDICNKKFTLLHMVNYHKRLKHFKEYTCHCDFCGRTLENKNALRRHINSVHLQKYDYGCRDCEKVFSTKSAADKHYQVIHEGKTIEYTCQFCNKTYRNDTSFKEHVQSHDPNFGKTKLQCQVCSRQFIKRTALRAHMNVKHKNREEVHICDICGKSLCSQSSLANHRRAHTGERPFSCQFCEKSFTSKPLLRIHVRVHTKEKPYSCEVCTKSFSQRATLTIHMRYHSGERPNTNCPECGKKFRSENLMQRHKVYVHGDKMFPCDICNKKFTLQYVLNYHKRVKHFKEYTCICDFCGRTWENKNSLKVHINSVHLQTYDYDCRDCGKVFNTKGAADKHYQVTHEGKTIEYTCQFCNKIYRNETSFKDHVQSHDPDFGKIKLQCHLCSKQFLKRKSLTSHILTHKNKKEGNVCDICGKSLTTQSSLANHIRTHTGERPFSCQFCEKSFTSKPLLRIHLRVHTKEKPFSCEVCNRSFSQKPTLTIHMRLPTTDRNPSVVQIGLTCTLCNKTYPTQDKFRRHFRNHQERKFFCDMCSFKTLYKSALESHKKAVHIKEDVYNCELCDKIFTNPWCLKSHMGNVHLKDYKFNCDKCGRGFYQKNQLITHDENVHQGIRHACTVCNKIFTTKAGLRLHSFAHDPSKKKMECPVCLKEVSRRTYKVHQRKHSGDETVGMHVCEICGKTVTSSAVKGHMRTHTGEKPYSCDICGKSLASSQILVTHKRTHTKERPFICQVCNKAFTQKPALNVHMRSLIGDGKQMTCEMCNETFQLPDEFNQHLATHAQLPHIHASKEKISRIKIKVQRNYVPPIKENGKFGCTNCGKEYSTKTSLAEHYETAHESNRYSCEICKKLFPTKYKLKLHQLVHDPNRKKIECPVCLKQIAPVWYRTHKKMHKNVDKELFKCDLCDKPFGSSIALNIHKQNVHLKNHRYVCDKCGQKFQHKASLLLHDANKHQDTPRECSICHKLFKTETSLRKHLRCHDPKFKKTQCPVCLKVLSARTVKIHEEMHAVSKERNAICDICGKTIAYRSNLKLHMRTHTGEKPYSCDKCGKCFSKSSTLVAHKRTHTNERPFICKVCNRGFTQKTPLKVHMRCHTGERPYACQICSKGFTTRGSLNGHKCPGPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -