Malt027103.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073430.1:67418819-67420690[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-07 5.8e-05 24.2 0.0 5 39 19 53 17 56 0.90
Sequence Information
- Coding Sequence
- ATGCCTCGAGTAAAAACTCGCACAACAGAAAAGGCATCATGGAATTTAAAGTCCATGGAAATGGCCATGAcggcagtaaaaaataataggcTGGGTGTTAGAGAAGCTAGTCGTTATTACAATGTCCCATATAGCTCATTACGTGACAGGTTACGATTAGGTGTTTGTAAAGTTCCACGAATGGGAAGGAAGACCACACTTTCCGCTGAAAATGAGAAAGAATTCGCTATGCAAGTCCTCAAGCTCTCGAAATTATTCTTTGGAGTAACGACACTTGGTCTTCGTCGAGCTGTTTTTCAGTTTGCAACAGAAAATGGTATTCCAAACAATTTCAACAAGGAACTAAAACTTGCCGGCAAAGATTGGCTATACGGATTTTTAAGAAGGCATCCTGAAATATCATTACGTAAGCCAGAATCAACCAGCATTTATCGTATAACAGCTTTTAACAAAGTTGAAGTGGAACGCTTTTTTGGTCTACTTGAGCAATTAATGACAAGATTTAATTTTCCACCAGAAAGGACCTTTAACATGGATGAAACTGGCATAACTACCGTTCATAAACCATCCAGAATTTTTGCACAGAAAGGACAGAAGCAAGTTGGAGCGGCAACTAGCTGGGAACGGGGGAAAACAGTAACAGTATGTTGCTGTATAAGTGCTGCAGGTGGCTACATCCCTCCAATGCTGATTTATCCACGTAAGCGCATGGCACCAGCTCTGGGAAAAAATGGGATACCTGGTTCAATATTACAATGTTCACAGTCAGGATGGGTCAATGAGGAGCTTTTTCTCATTTGGCTTCAGCATTTTGTTAAACATACCGCATCAAGTATTGAAAATCCAACTCTACTCATTTTGGACAACCATGAGAGCCACTCAAATTTACAAAGCTTCCAGTATTGTCGACAAAATGGTGTGCATCTTCTATCGATTCCGCCCCATACATCTCATCGATTACAGCCGTTGGATCTCACATTTTTTGGTCCACTAAAGAAATCGTATGATCGAGAGTGTGATATGTTTATGAAAACTCACAATTAcgaaaaaattagtcactaTGACGTAGCAGATTTGCTGCGTAGATCATATGTGCGAGTTGCTACAATAGAAAAAGCAATCAAAGGCTTCCAATCTGCAGGTATAATGCCACTTAATCCATCTGTTTTTGATGAGGACGATTTCTTACCTGCTGACCTTCTCACACCTAATCCAAATTCAGTCTACAATGCAGCGCAAACTGTAGAAGTTCCTCAACATAGAACACCATCTCCAAAAAATATAGTGGATCCAACTGAGAATTCTCGAATTCCTGGCCACAGAACATCACCCCTGATTGATCAACAAAGAACAACGTCTCCTATAAGCGAATTTTCTTCTGAAGATGAATTACCTTTGAAGCAATTAATGGACAGCCATCAACTTAACAAATATTCACCTTGCCTTAATGTGTCAGTACAGAATATATTACCCTTACCCACTAATATCTCGGCAAAAAAATCTGCAAGAAAGaatagagaaaaaaaacatGCAGAAATTTTAACATCTACCCCGATGAAGACAGTCTTAGAAGAGAATGAGAAAAAGCGTCAAGAAAAAAGGCGAAGAACCGAAGCCATAGAAAATGCAAAGCGTGGAGGTGGGAAGATCAAGGCAGAGTTGAAAGTGAAAGAGaaactgaaaaagaaaaattcaatttctttaaCAGTTGGTGATCCAGAAAAAGACTTATGCTCGGTATGCGGTGAGTTTGGTAAAGACAATGAACTATGGTTCCAATGCTGCATTTGTCAATTGTGGGCCCATGCCGACTGCACGGATCAGCAATCTGGGTCAATAGGTTATAAATGTGATAACTGTCGTTATTTATAA
- Protein Sequence
- MPRVKTRTTEKASWNLKSMEMAMTAVKNNRLGVREASRYYNVPYSSLRDRLRLGVCKVPRMGRKTTLSAENEKEFAMQVLKLSKLFFGVTTLGLRRAVFQFATENGIPNNFNKELKLAGKDWLYGFLRRHPEISLRKPESTSIYRITAFNKVEVERFFGLLEQLMTRFNFPPERTFNMDETGITTVHKPSRIFAQKGQKQVGAATSWERGKTVTVCCCISAAGGYIPPMLIYPRKRMAPALGKNGIPGSILQCSQSGWVNEELFLIWLQHFVKHTASSIENPTLLILDNHESHSNLQSFQYCRQNGVHLLSIPPHTSHRLQPLDLTFFGPLKKSYDRECDMFMKTHNYEKISHYDVADLLRRSYVRVATIEKAIKGFQSAGIMPLNPSVFDEDDFLPADLLTPNPNSVYNAAQTVEVPQHRTPSPKNIVDPTENSRIPGHRTSPLIDQQRTTSPISEFSSEDELPLKQLMDSHQLNKYSPCLNVSVQNILPLPTNISAKKSARKNREKKHAEILTSTPMKTVLEENEKKRQEKRRRTEAIENAKRGGGKIKAELKVKEKLKKKNSISLTVGDPEKDLCSVCGEFGKDNELWFQCCICQLWAHADCTDQQSGSIGYKCDNCRYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01014347;
- 90% Identity
- iTF_01014345;
- 80% Identity
- -