Malt000295.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073426.1:4446004-4447218[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.3e-08 1.2e-05 26.3 0.0 3 41 13 51 11 54 0.90
Sequence Information
- Coding Sequence
- ATGTCCAAAAGAGGAAATTATGGTCAATGGTCTCAGGCGAACTTAGAAGAGGCATTAAATGCTTACAGAAATAATGGCGTAGGATTAAACGAATGCCAGAGAAGATATCATGTTCCAAAAGCCACTTTAAAACggcatttggaaaataaaaacaaaattgcgaATGATAAGACAAAGGCATTAGGTAGACCTACTGATTTCAGTCAAGAAATAGAAAACCTTCTTGTTAAGCACATTGTGAAATTTGAAGAAAGAATGTTTGGTCTGACTATTACCGACATAAGAAGATTAGCTTATGATTTGGCAGAAGACAACCATATTTCGCATCGGTTTAACACTGAAAAACGTATGGCAGGGAAAAAATGGTTCTATGGTTTTATGCGACGTCATCCTCAACTTTCTGTCCGCCAGTCTACCTCAATTGCAAGGGCGAAGGGTTTTAACAGAGAACGAGTACAGCATTTTTTTGATATCTTTGAGCAATTGGtggataaatacaaaataacagCGAACACCATTTTCAATGTAGATGAATCTGGAATTAGTACGGTTCAGAAACGAATGCCAAAAGTTGTGTCTTTGAAAGGCAAAAGACAAGTGGGTGGAATCACTAGCGGAGAGAGAGGAGTTAATACTACAGTAGTATGCTGTTTGAGTGCCGCTGGACTATATATTCCGCCCATGTTAATTTTTAAGAGAAAGCGATATGCGCCTGAGCTAGAAATAGGAGCTCCTTTAGGTGGGTCAGTGGAGATTTCTGATACAGGATACATTAATTCTgacctttttttaaaatggctgaAGCATTTTAAGAACGTGGTGCAACCTGGTCCTGAAAAAGCAGTGATTTTGTTACTGGATGGACATTCGACTCATAGTAAAAATTTAGATGCCCTAAATTATGCAAGAGAGCATAATATTCACCTGCTTCAACTTCCTGGCCACACCACCCACAGACTTCAACCACTAGACGTGGCTTTTTTCAAGCCACTGCAGAGCTATTACGTTCAAGCACAAGAAAAGTGGTTACGAGCCAATGTTGGAAAAACTATTTCTCAGTACCACGTGGCTGCTTTATTTTCAGAAGCCTACGGAAGAGCAGCAACTGTAGAAATTGCTGCAAGCGCTTTTCGTGGTTCAGGAATTTGGCCTGTAGATCGAAATCACTTTAAAGACCATGATTTTGCAATATCCGAAGTGCTTTGTTTAAATTAA
- Protein Sequence
- MSKRGNYGQWSQANLEEALNAYRNNGVGLNECQRRYHVPKATLKRHLENKNKIANDKTKALGRPTDFSQEIENLLVKHIVKFEERMFGLTITDIRRLAYDLAEDNHISHRFNTEKRMAGKKWFYGFMRRHPQLSVRQSTSIARAKGFNRERVQHFFDIFEQLVDKYKITANTIFNVDESGISTVQKRMPKVVSLKGKRQVGGITSGERGVNTTVVCCLSAAGLYIPPMLIFKRKRYAPELEIGAPLGGSVEISDTGYINSDLFLKWLKHFKNVVQPGPEKAVILLLDGHSTHSKNLDALNYAREHNIHLLQLPGHTTHRLQPLDVAFFKPLQSYYVQAQEKWLRANVGKTISQYHVAALFSEAYGRAATVEIAASAFRGSGIWPVDRNHFKDHDFAISEVLCLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01014320;
- 90% Identity
- -
- 80% Identity
- -