Malt017122.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073428.1:51664777-51665496[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.7e-09 1.3e-06 29.4 0.0 1 39 14 54 14 60 0.81
Sequence Information
- Coding Sequence
- ATGCCgaagtttattaataaaaatatacgagGGCAATGGGACGAAGAGCATATGAGAACAGCAGTTAGAAAAGTGCTTGATAACGAGTTAGCAATAAGAGATGCGGCAAAACGTTATGGTGTTCCTAAAAGTACTCTTGCTCAAGTAAAACACTTGAAAAATAACGAAGAAACACAACTTATTCCAAGTCTTGGACGATATCGCTGCACATTTCCCGCCAACTATGAACAGGAGCTTGTGAACCACATGCGGGATTTGGATAGTCGCATAATGCCCCTCACCAAAAAAGAATTCTTAAAACTTGCGTTTGATGTGGCGGAGCGCTTAAAAATTCCACATAGATTCAACAGGGAAAAAAAGACTGCTGGGAAAGACTTTTACTACACTTTTCTCCAGCGCCATCCAGAGCTGTCTTTAAGAAATGCCGAGTCAACGAGTTTGCAGAGAGCAGTAGGCTTCAATCAACCACAAGTTGcaagattttttaacaaacttgaagatctaatgcaaaaatataactTCCGAgccaataaaattttcaacgcTGATGAAACCGGTGTGTCTACAGTCCACGAGTGTCGGCACAAAGTCGTCTCAATAAAAGGCAAGAAACAAGTTGGCAAAATGACTTCTGGAGAAAGGGGCCGCACTATAACCGTCTTATTGTGTATCAATGCAGCAGGAGATCAATTCATACCTCCACTATTCATTTTTTcctag
- Protein Sequence
- MPKFINKNIRGQWDEEHMRTAVRKVLDNELAIRDAAKRYGVPKSTLAQVKHLKNNEETQLIPSLGRYRCTFPANYEQELVNHMRDLDSRIMPLTKKEFLKLAFDVAERLKIPHRFNREKKTAGKDFYYTFLQRHPELSLRNAESTSLQRAVGFNQPQVARFFNKLEDLMQKYNFRANKIFNADETGVSTVHECRHKVVSIKGKKQVGKMTSGERGRTITVLLCINAAGDQFIPPLFIFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00416165; iTF_01516802; iTF_00416133; iTF_00416185;
- 90% Identity
- iTF_01516802;
- 80% Identity
- -