Malt024568.1
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- -
- Assembly
- GCA_037114965.1
- Location
- CM073430.1:28022334-28023535[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-08 1.2e-05 26.4 0.0 3 40 13 50 11 54 0.90 2 2 1.5 3e+02 2.7 0.0 24 37 289 303 289 310 0.78
Sequence Information
- Coding Sequence
- ATGTCTAGAAGAGGAAATTATGGTCAATGGTCTCAGGCGAACTTAGAAGAGGCATTAAATGCTTACAGAAATAATGGCGTAGGATTAAACGAATGTCAGAGAAGATATCATGTTCCAAAAGCCACTTTAAAACggcatttggaaaataaaatcaaaattgcgAATGATAAGACAAAGGCATTAGGTAGACCTACTGATTTCAGTCAAGAAATAGAAACCCTTCTTGTTAAGCACAttgtgaaatttgaaaaaagaatatttaGTCTGACTATTACCGACATAAGAAGATTAGCTTATGATTTGGCAGAAGACAACCATATTTCGCATCGGTTTAACACTAAAAACGTATGGCAGGGAAAAAATGGTTCTATGCGACTTCATCCTCAACTTTCTATCCGCCAGCCTGAGTCTATCTCAACTGCAAGCGCCAAGGGTTTTAACAGAGAACGACGGAGAGAGAGAGGAGTTAATACTACAGCAGTATGCTGTTTGAGTGCCGCTGGACTATATATTCCGCCCATGTTAATTTTTAAGAGAAAGCGATATGCACCTGAGCCAGAAATAGGAGCTCCTTTAGATGGGTCAGTGGAGATTTCTGATACAGGATACATTGATTCTgacctttttttaaaatggctgaAGCATTTTAAGAACGTGGTGCAACCTGGTCCTGAAAAAGCAGTGGTTTTGTCACTGGATGGACATTCGACTCGAAAATGTAAAGCCCTAAATTATGCAAGAGAGCATAATATTTACCTGCTTCAACTTCCTGACCACACCATCCACAGACTTCAACCATTAGACATGGCTATCTTCAAGCCACTGCAGAGCACAAGAAAAGTGGTTACGAGCCAATGTTGGAAAAACCATTTCTCAGTACCACGTGGTACTTTATTTTCAGAAGCCTACGGAAGAGCAGCAACTGTAGAAATTGCTGCAATCGCTTTTCGTGGTTCAGGAATTTGGCCTGTAGATCGAAATCACTTTCAAGACCATGATTTTGCAATATCCGAAGTGCTTTGTTTAAATGAAGGGCAGATACATGAGTAG
- Protein Sequence
- MSRRGNYGQWSQANLEEALNAYRNNGVGLNECQRRYHVPKATLKRHLENKIKIANDKTKALGRPTDFSQEIETLLVKHIVKFEKRIFSLTITDIRRLAYDLAEDNHISHRFNTKNVWQGKNGSMRLHPQLSIRQPESISTASAKGFNRERRRERGVNTTAVCCLSAAGLYIPPMLIFKRKRYAPEPEIGAPLDGSVEISDTGYIDSDLFLKWLKHFKNVVQPGPEKAVVLSLDGHSTRKCKALNYAREHNIYLLQLPDHTIHRLQPLDMAIFKPLQSTRKVVTSQCWKNHFSVPRGTLFSEAYGRAATVEIAAIAFRGSGIWPVDRNHFQDHDFAISEVLCLNEGQIHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -