Basic Information

Insect: Monochamus alternatus
Gene Symbol: pol
Assembly: GCA_037114965.1
Location: CM073434.1:27373487-27384801[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.6e-11 9.1e-09 36.4 0.0 5 43 890 929 888 931 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.6e-11	9.1e-09	36.4	0.0	5	43	890	929	888	931	0.94

Sequence Information

Coding Sequence: ATGCTATCCGATCAAATCATCAGACCAAGTATATCCCCGTGGAGCTCACCTATCTGGGTAGTCCCTAAAAAATCTGACGCCTCCGGTAAAAAGAAATGGAGAATTGTAATTGACTATAGGAAATTGAATGAAAAGACTATAACAGACAGATACCCCATACCAAATATAACAGACATATTGGACAAACTAGGCAGAAGTTGCTATTTCACCACTCTAGACCTTGCTTCAGGATTTCACCAAATAGAAATGTCACCCGAATCAATTTCGAAAACAGCTTTCAACACAGAGCATGGCCATTATGAATTTCTCAGAATGCCCTTTGGACTAAAGAATGCCCCAAGCACCTTCCAACGCATGATAGATAACGTCCTTCGAGAACATATCAACAAAACTTGTTTAGTATATTTAGATGATATCATTGTTTTTTCGACTTCATTACAAGAacacattaataatttgaaacgAATTTTCCAAACTCTAAGAAATGCTAACCTCAAAATCCAACTAGATAAATCAGAATTCCTTAGAAAGAATGttgaatttttaggacatattgtCACACCAGATGGAATCAGACCAAATCCAGCTAAAATAGAAGCAATAAAGAAATTTCCCATACCAAAGACtcacaaagaaataaaatcatttctcgGACTATTAGGTtactatagaaaatttattaaagattttgccaaattaacAAAACCTTTGACTAACTGTCTAAAGAAAgaccaaaaaattgaattaacacCAGAATATGTCTCATGTTTCGAACATTGTAAAACACTATTATCTAACGAACCCATTTTGGCATATCCAGACTTTGAAAAACCTTTTGATTTAACTACAGACGCATCCAATTATGCCGTAGGAGCTGTATTGTCGCAAGATAACCATCCAATAGCTTACGCATCTAGAACCTTAAATCCTGCAGAGACCAACTATTCGACAATTGAGAAAGAGCTACTAGCTATAGTATGGagctgtaaatattttagaccttaTATCTACGGAAAGAGATTTACTATATACACTGACCATAAACCACTCGAATGGTTAGCTAATTTAAAATCACCAAACACCAGATTAATAAGATGGAGACTGCATCTCGAAGAATTCGActacgaaataaaatataaacaaggaAAATCAAACTATGTTGCAGACGCACTTTCGAGAATCAAAATTAACAAAGAACCACACGAAGTCCATGTAGTAACAAGAAGCAAGAAAACAACTTTAGAAGACGACCTGTCATCAATGTTAAATAACGTAGACGAACTACCAGACGTAGACGAAATAAGCCTAAAAGAAATCCTAGACACACTAACAGAACCCATGCAAGAAGAATCGATAATAGAACCACCAGTAGAATCACCAATAGAACCACCACAGAATGACTTCGAAGACGAAATTCCTTATGCAATCATCACAGCCCCCGAAAATCTAAACCCAAGAGACAATGACGAAACAGCAACTGTACATTCTTCCCACGAAAATCCAATTCAAGAATTCCCCATTACAGAAAAACCTATAAATCAATATAACCTTACAATCATTCCCCTTGTCCCTTATTTTGGAATGAGTACAAAAACCTACACGACCACCAGCCAAGCATGTCCAAAAATCGAGGATGTATACCTATGCAACTCACCTAGTCAACTAAAAGATGACAGCTGCTTAGTGCAACTACTATCCGAAGCTGATCCCAGTCGTTGCCAAGTGCATCATGTGCAACCCACAAAGCCTATTGTCATTATGCTAGAAGAAAACCATGTTCTAGTAATTCCCACTGACACATTGCAGTTCCCCAATTGTGAAGATGGAATATTAACAATCAATCAACCTGTCATACTCCAATTACCAAAAGGCTGTAATACAGTAATAGCTAATCAACGATTTTCGGCAACCAAAACCGAAATTCAACTACCAATATTTCGATTACCTGAAATAAAGACATCCCAACTTTGGAATCTAACGGTAAACAAAGCATTACCTTTACAACTGAAAGAAGTTGACACCACAAACATTAACTCACTAGCCAACCTAGCCAGAGAAACTAGTCAATTATCACGATTGACCCCTGAATCCATCGACACACTGACATCCACCAATTACTGGATATACATTGCCATTGCCCTCACTATATGCATAGCAATGATTGCAGCACTCCACATCAGGCGATCAACCCGATGTTCCCAACTGGTACAACAACTTACTAGAAGGAACCATAAGAAACCAGAATTAACTCCATCGTCAGGAGACGAAGCCATCACTACGTCGGGAGGAGTTATATTAGTTACGTTGTCATGGGATTTCATTGTATGGGTCAAAAAGAATACCATTGATAACGTTCCATATATTTGGGCATCTGAGGACAACAGTTTTTACAAATATCTATTGGGTATAACTAAGAAAAATGTGAGGAAAATAATATACGAGTTAAGAGATCTCAAGGAGAACTCTGGTGTcaaCGAAGCTCAATACACTTCAAATTTTGAAACAGACACTGATGATGAAATAGATACATGCAAAAAGAGGACAAAACCTAGAAGATTAATAGAAGAGGATGATAATAGTAACGAAAAAAGCGGAAAGGTTAACATAGCACGTAAATACAAAGGGAAAGTGGGTTCCAGGCGGTACAGAAATTATAGCGACATCAGTTTAAATAGTGCAGTGGCAGATATTGTAAATGGAAAACTCTCCTACCAACAAGCATCTGACCAATATGATACTCCTAGGAGAACCCTCTGGAATAAAGTTCACAAAAGACATTTACAAAAACCTAGAGGTGTCACAGTTTTATCAGAAGTGGAAGAATACCATATAGTTGACGTTTTGTTGGCTGCAGCTGAGTTCGGTAGTCCCATGACAAGTTTCGAATTACGACAAGTAGTGAAACGATACTTATACAAAGAAGGAAAGGTAGTAGaAAGGCTATTATCGAACAGAACTTGCCAGAATATGAAGGGGGTAAGAGCTCAAAAAACCGAGGAAGAAATGATTGCCTATTTTGAAAATCTCGAAAGGACTTTAGAAGGAGTATCTCCTGACAGCATACTAAACTACGACGAAACAAATCTCTCTGACGATCCCGGAGCACGAAGATGTTTATTTCGAAGAGGAACCAAATACCCAGAAAGGATTATGAATTCGTCTAAATCTGCTACGTCAGTAATGTTTGCAATAAGCGGGGATGGTAAAAGTTTACTGCCATATGTAGTCTATAAGGCTGAGGGAATGTACGATTAG
Protein Sequence: MLSDQIIRPSISPWSSPIWVVPKKSDASGKKKWRIVIDYRKLNEKTITDRYPIPNITDILDKLGRSCYFTTLDLASGFHQIEMSPESISKTAFNTEHGHYEFLRMPFGLKNAPSTFQRMIDNVLREHINKTCLVYLDDIIVFSTSLQEHINNLKRIFQTLRNANLKIQLDKSEFLRKNVEFLGHIVTPDGIRPNPAKIEAIKKFPIPKTHKEIKSFLGLLGYYRKFIKDFAKLTKPLTNCLKKDQKIELTPEYVSCFEHCKTLLSNEPILAYPDFEKPFDLTTDASNYAVGAVLSQDNHPIAYASRTLNPAETNYSTIEKELLAIVWSCKYFRPYIYGKRFTIYTDHKPLEWLANLKSPNTRLIRWRLHLEEFDYEIKYKQGKSNYVADALSRIKINKEPHEVHVVTRSKKTTLEDDLSSMLNNVDELPDVDEISLKEILDTLTEPMQEESIIEPPVESPIEPPQNDFEDEIPYAIITAPENLNPRDNDETATVHSSHENPIQEFPITEKPINQYNLTIIPLVPYFGMSTKTYTTTSQACPKIEDVYLCNSPSQLKDDSCLVQLLSEADPSRCQVHHVQPTKPIVIMLEENHVLVIPTDTLQFPNCEDGILTINQPVILQLPKGCNTVIANQRFSATKTEIQLPIFRLPEIKTSQLWNLTVNKALPLQLKEVDTTNINSLANLARETSQLSRLTPESIDTLTSTNYWIYIAIALTICIAMIAALHIRRSTRCSQLVQQLTRRNHKKPELTPSSGDEAITTSGGVILVTLSWDFIVWVKKNTIDNVPYIWASEDNSFYKYLLGITKKNVRKIIYELRDLKENSGVNEAQYTSNFETDTDDEIDTCKKRTKPRRLIEEDDNSNEKSGKVNIARKYKGKVGSRRYRNYSDISLNSAVADIVNGKLSYQQASDQYDTPRRTLWNKVHKRHLQKPRGVTVLSEVEEYHIVDVLLAAAEFGSPMTSFELRQVVKRYLYKEGKVVERLLSNRTCQNMKGVRAQKTEEEMIAYFENLERTLEGVSPDSILNYDETNLSDDPGARRCLFRRGTKYPERIMNSSKSATSVMFAISGDGKSLLPYVVYKAEGMYD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -