Malt042123.2
Basic Information
- Insect
- Monochamus alternatus
- Gene Symbol
- JRKL
- Assembly
- GCA_037114965.1
- Location
- CM073434.1:36846664-36848193[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-10 2.3e-08 35.1 0.0 3 36 17 50 15 60 0.86
Sequence Information
- Coding Sequence
- ATGCCGCGAAATTATGCAAGAAAGTCTAATAGGCAATCGTGGGATGCTGAGTCTATGTTAAAGGCAATAGAAGCCGTTAATAATGGTGAAATGGGATGGCTGAAGGCatcaaaaatttacaatatacCTCAAGCAACCCTAAGGAGACATgctttgcaaaaaaataaaactttaaaaaaaggtGAAAAACAACTGGGCAGGTTTAAACCCACATTTCCTATAGAAGTAGAACGGCAGTTAGTGGAACATTTAAAATTGCTAGAATCAAGGTTCTTTGGACTAACAAGACGAGACGTATTGGAGTTAGCCTATAATTTAGCCGTAAAAAATGGGAGAAATCCAGACATAACACTACGTAAACCCGAAGCCACATCTGCGGCTAGAGCACAGGCATTTAACAAACCTCAAGTAGCTCAGTTTTTTAACGTGTTAGACGAAACCATGCAAAAGGAAAACATTGATCCCATGAAGATATATAATGCAGATGAATCTGCATTATCTACTGTACAGCGCCCGCAGAAAGTATTTGCTACAACTGGTCGGAAACAAGTAGGTGCAATTACCAGCGCAGAAAGGGGTTCTCACGTTACAGTTGTTTGCTGCATGTCTACTAATGGGAACTATATTCCGCCTGCCTTAATTTTTCcacgaaaaaatatgaaaaaagaaTTAACCGACCATACACCTGCAGGAACTTTATGCATTGCCCAGGAGTCCGGCTGGATGACTGGTCCAGTATTCTTGCAGTTGCtgcaacattttcaaaaatatgccaAGGCATCTCCCACTGAAAAGGTTTTATTAATCGTGGATGGACACTCAAGTCATAAATATCTTGATGCTCTTGTGTACGCCAAAGAAAATGGCATTGTGCTTTTGTGTTTGCCGCCTCACTGCACACATCGAATGCAACCACTCGATGTTGCATTTTTTGGGCCACTCAAAACCTATTATGATCAAGAAATAACCAAATGGCTCAAAAGTCATCCTGGTCGTGTTGTGACACAATTTCAAATTGGTGGTCTGCTAACTGAAGCGTATGGAAAGGCAGCTACTGTTCAGAACGCCACTCATGGATTCGCCAAAACAGGCATCTACCCAATAAACCCCGGTGTGTTCCCTGACCATATGTTTCAACCATCTGAAACAACCAATATTGTGTTTGATAACAGTGTCCAACAAGCCGCAAACGTTCTTACTGATGATAATGCTCAACCTGGACCGAGTTGGAAAAATGCTTCCGCCATAGAACCTCTCCTCGCCATTCCTACAGCGGCTCAGAAAAACTTGCAAAATCCAACAAGCGGTATTTCAATTTTGGTTACTCCAGCGGATTTAAGTCCAGTTCAGGTCGGACCATTTGTGTCAGGCCAGGGAAAAAGAAAGCCAAGGAAACGTCAAGGCACTTCTGTCCTAAACTCTACTCCAAATTTGGAAGAGGCAAAAGAAAAAAACCGAAACTAA
- Protein Sequence
- MPRNYARKSNRQSWDAESMLKAIEAVNNGEMGWLKASKIYNIPQATLRRHALQKNKTLKKGEKQLGRFKPTFPIEVERQLVEHLKLLESRFFGLTRRDVLELAYNLAVKNGRNPDITLRKPEATSAARAQAFNKPQVAQFFNVLDETMQKENIDPMKIYNADESALSTVQRPQKVFATTGRKQVGAITSAERGSHVTVVCCMSTNGNYIPPALIFPRKNMKKELTDHTPAGTLCIAQESGWMTGPVFLQLLQHFQKYAKASPTEKVLLIVDGHSSHKYLDALVYAKENGIVLLCLPPHCTHRMQPLDVAFFGPLKTYYDQEITKWLKSHPGRVVTQFQIGGLLTEAYGKAATVQNATHGFAKTGIYPINPGVFPDHMFQPSETTNIVFDNSVQQAANVLTDDNAQPGPSWKNASAIEPLLAIPTAAQKNLQNPTSGISILVTPADLSPVQVGPFVSGQGKRKPRKRQGTSVLNSTPNLEEAKEKNRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01014276;
- 90% Identity
- iTF_01014276; iTF_01014228;
- 80% Identity
- -