Basic Information

Gene Symbol
nfxl1
Assembly
GCA_029963825.1
Location
JAPWTJ010002830.1:13426-29663[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 3 3.2e+04 -7.8 5.6 15 19 164 168 163 168 0.81
2 13 0.19 2e+03 -0.3 0.4 4 10 199 205 198 205 0.95
3 13 4.3e-08 0.00046 20.9 17.0 1 19 213 230 213 230 0.99
4 13 0.2 2.1e+03 -0.4 1.7 5 10 232 237 232 237 0.96
5 13 2.1e-08 0.00022 22.0 14.3 1 18 243 260 243 261 0.97
6 13 1.7e-06 0.018 15.8 9.7 1 18 296 313 296 314 0.97
7 13 1.5 1.6e+04 -3.2 0.2 1 4 323 326 323 327 0.87
8 13 8e-05 0.84 10.5 17.1 1 18 348 365 348 366 0.94
9 13 1.7e-10 1.8e-06 28.7 12.0 1 18 375 392 375 393 0.98
10 13 0.00043 4.5 8.2 6.5 10 19 479 488 477 488 0.92
11 13 0.011 1.1e+02 3.7 5.5 3 12 499 508 498 508 0.91
12 13 3 3.2e+04 -5.1 3.1 14 18 536 540 536 541 0.86
13 13 9.2e-06 0.097 13.5 6.5 1 12 577 588 577 588 0.96

Sequence Information

Coding Sequence
atgCATGGACAACGTAAACCACCAAATCCTTGGAATAAAAATGtagatcaaaataaaagaaaacagaaCATTCCTAACCTAAAATCTTTACCAACCCCTTCCGAAATTAAATTCAAAGAAGTTCAACAAAAACTACAGGCAGCTGTTAAAAGACATGTAACGAATTACGAATCATCTTCCGATGAAGAGGAATTAGAAACTACAAATGCAATTGaGGACATACTAAAAACCTATAAAAGTACTGGTGGGAAAAATGAATACCTTGGGCGTACACAGTCTTTTATAGAAGAAGCTTTTCTGTCAGGTGCAGCTACATGTCTGATTTGTATATCAAAAATTAAACGGGACGATTCGattTGGAGTTGTACTAGTTGCTATGGATTTTTCCACCTTATGTGTATACAGAGATGGTCTAAAGATACTATAATCCAGCGGAAACACGCTTTAGGAGAACAAACTTTAGTTcaacaaataaaacttttttggtgTTGTCCTAAGTGCCGTTTTGAATATACCTCAGAAGACATTCCCAACAAATACTTATGTTTTTGTAAGAAGACTGAATACCCCAAATTTCACCCATATTTGGTTCCACACTCATGCGGAGAAATTTGTAAGAAGGACCTAATACCAAACTGTGGGCATAAATGCCTACTTTTGTGTCATCcagggCCATGTCCTCCATGTCCAGTGACATGTGAGGAGGTATGTAACAAATTACTAAAATGTGGACATCATAGATGTCAGTTAGTGTGCCATTCAGGAGAATGTGATGAATGCGAGCTAAATAAACCTAGGACATGCTCATGTGGCAAGACAACCTATCAGATACCTTGTACCGATGAGACACCGAATTGCCTAGATACGTGTGATAAAGTTCTTGATTGTGGTATACACAGATGCAACCAAAGGTGTCATAAAGAAATTTGTGGAGTGtgtttAGAGACTGTTGTAAAATCCTGCAGATGTGGACTTCATTCCAAAGAAATTCAGTGTTATAAACCATATTTTTGTGAAACCAAATGTAAGAAACTGAAAGACTGTAACAAGCATCCTTGCAATAGAAAATGTTGTGATGGTAATTGTCCACCATGCGAAAAACCATGTGGACGAACACTTAACTGTGGTAACCATAAATGCAATTCAATATGTCATAGGGGTCCATGTTATCCATGTGCTCAAACCGATACAGTGTCTTGTAAATGTGGCTCTACTAAAACAACAGTGCCTTGTGGTTATAAACATAAGACGAAACCCCTAAATGTAATAGGGCTTGCTTTCCTGAAACGCTCCGGCATCCTAAAACTGGATGATACAGTACTGAGGCACACGCTGGAGAGAGGCAACCTGCCCGCTTGTGGTATTTCCCTCCTTGTTACGCTTAAGTTTACGTTGCCACCAGACTGTCACCATGAAAAGAGGGAGTATCATCGGTGCCACTTTGGTGATTGTCCTCCTTGTCGGCAGACATGTAGGAAGTTCAGATCAACTTGTAACCATCCCTGTAGTGCTCCATGTCATTCATCTGTACTTGTTAAAATTGAAGGAGAAAAGCCATCGATGCCttgggaacaaaaaaaaacacagctAGAGAAAAGGGCCTTGCCCTGCCCTGACTGCGCTGTTTTAGTATCAGTTACTTGTTTAGgcGAACATGAAACTGTCAACTGGCCCTGTTATTTGGCAAAGCCGTCAAGTTGTTATCGACTATGTGGAAGAATGTTGGAGTGTGGTAATCATACCTGTAATTTACCTTGCCACACTGTTGAATTGGCACCAGATAAGGTTATGGTATGTAGTTATAGTTTTCCTTATTCAAAACTGGCAGCACTGAGAAGATGGGGACAAAGGCAGCCATTGGCAGAAATACAAAATACAGAGAATCCACTTAGAAGCGAACAAGAAAATGAACAGGTAGTTGATGATGAAAATCAGGAACTAGAAACAGAGGTAGAGTCAAAGGGCGAACAAAAAGCTTTGGCGATGGAAGGAAAAAAGAATGGATTTTTGTCAACATTTACAGTAAAATGTAATATGTGTGGAGCTACGTCTTTATTAGAATCAGACAGGTGTGAGAAACAAATGGATTTAAACATGACATCAGTGCTAGctaCTACCTCAACTGGTTTCAAAAAATATCTTCAAAATCACAGTGATTTAGAGAAAATAATTCAAGGCGTATTAATGCAAGAATTAAAATTAGCTGGAGAGGAAGAAGCTAAACTCGCAATAGATAATGGACATATTGATAAAGATGGTACTCCATGCATAACAGTCATAGCAGACGGAGCATGGTCCAAGAGGTCATACAAGACTAACTACAATGCCCTGTCTGGGGTGGCGGTGATAATTGGTGAAGCTACAAAAAAGGTGTTGTTTTTGGGtgtgaaaaacaaattttgcatGTTCTGTTCAAGACATGAGTCTAAGAACGAAACTGTGTCTGATCATTCTTGCGCTTAA
Protein Sequence
MHGQRKPPNPWNKNVDQNKRKQNIPNLKSLPTPSEIKFKEVQQKLQAAVKRHVTNYESSSDEEELETTNAIEDILKTYKSTGGKNEYLGRTQSFIEEAFLSGAATCLICISKIKRDDSIWSCTSCYGFFHLMCIQRWSKDTIIQRKHALGEQTLVQQIKLFWCCPKCRFEYTSEDIPNKYLCFCKKTEYPKFHPYLVPHSCGEICKKDLIPNCGHKCLLLCHPGPCPPCPVTCEEVCNKLLKCGHHRCQLVCHSGECDECELNKPRTCSCGKTTYQIPCTDETPNCLDTCDKVLDCGIHRCNQRCHKEICGVCLETVVKSCRCGLHSKEIQCYKPYFCETKCKKLKDCNKHPCNRKCCDGNCPPCEKPCGRTLNCGNHKCNSICHRGPCYPCAQTDTVSCKCGSTKTTVPCGYKHKTKPLNVIGLAFLKRSGILKLDDTVLRHTLERGNLPACGISLLVTLKFTLPPDCHHEKREYHRCHFGDCPPCRQTCRKFRSTCNHPCSAPCHSSVLVKIEGEKPSMPWEQKKTQLEKRALPCPDCAVLVSVTCLGEHETVNWPCYLAKPSSCYRLCGRMLECGNHTCNLPCHTVELAPDKVMVCSYSFPYSKLAALRRWGQRQPLAEIQNTENPLRSEQENEQVVDDENQELETEVESKGEQKALAMEGKKNGFLSTFTVKCNMCGATSLLESDRCEKQMDLNMTSVLATTSTGFKKYLQNHSDLEKIIQGVLMQELKLAGEEEAKLAIDNGHIDKDGTPCITVIADGAWSKRSYKTNYNALSGVAVIIGEATKKVLFLGVKNKFCMFCSRHESKNETVSDHSCA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-