Mmin013200.1
Basic Information
- Insect
- Molorchus minor
- Gene Symbol
- -
- Assembly
- GCA_029963825.1
- Location
- JAPWTJ010000585.1:29350-38814[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0048 0.44 11.9 0.1 1 23 273 295 273 295 0.98 2 18 8.1 7.4e+02 1.7 4.9 1 23 346 368 346 368 0.96 3 18 0.1 9.2 7.7 6.8 1 23 377 399 377 399 0.96 4 18 0.0082 0.75 11.2 4.8 1 23 421 443 421 443 0.98 5 18 0.0082 0.75 11.2 4.6 1 23 450 472 450 472 0.97 6 18 0.042 3.8 8.9 3.3 1 23 481 503 481 503 0.95 7 18 0.022 2 9.8 4.0 1 23 512 534 512 534 0.97 8 18 0.46 42 5.7 7.0 1 23 543 565 543 565 0.97 9 18 0.17 16 7.0 1.1 1 23 574 596 574 596 0.93 10 18 0.0065 0.6 11.5 5.0 1 23 605 627 605 627 0.95 11 18 0.034 3.1 9.2 3.5 1 20 636 655 636 660 0.92 12 18 0.027 2.4 9.5 3.3 1 23 688 710 688 710 0.98 13 18 0.033 3 9.3 3.6 1 23 717 739 717 739 0.96 14 18 0.5 46 5.5 5.1 1 23 769 791 769 791 0.98 15 18 6.5 6e+02 2.0 1.4 1 23 798 820 798 820 0.92 16 18 0.009 0.82 11.0 2.7 1 23 829 851 829 851 0.97 17 18 0.0012 0.11 13.8 2.8 1 23 860 882 860 882 0.94 18 18 0.045 4.1 8.8 3.4 1 23 891 913 891 913 0.97
Sequence Information
- Coding Sequence
- atgcaagGAACTAAAGATTTATGCAGGCTCTGTTTCACAGAATTAAGCACTTGCGTTGAGATAATAGGAGATTATATGAAAGAGCTTTTTGAAGTACTTCTCTTAAATGTGAACTTGGCCATTTCTGAGTACCCCGTAATATGTCAGAATTGTTCAGAACTTGCTCGGAGAGCATTCAGTTTTAAAAGTACATGCATTTCTACAGAAGAAATTATACTGTCACATGCCGTTGCCAAAGATGTTACCAGTTTGGATATGAAATGGATTTATCATATGGAAATGGCTTATGAAGTCACTGGAAATAATAATGTATGTCGTTTTTGTATGGGGTACATAGGGGAAGACAACTATATATGCCTAGAAAATATAAAGTGTTTGCCAGATGATCCATTACGACGTTTTCTTCCAGAAATAgaattcgATATTGTACAGCCAGTAGCCTGTATAAACTGCGTAGAGCTGCTGATGAACTATTTTAAATTTGCGTCAACTTGTGCATCggtagaagaaaaaataaacaaatactgtGAACACGAAGGGACAAATAGTAAcggttttgtaaatttcaacGATGTAGTGAAGTTTTCTTGTGCAGAAGCTCTAAAATGTGCCGTCACATGTGATGAAATGTATATTAACCACACTTTATCTaatgatgaagatgatgaatttaaagaaaatgataTTCAGATTGAAGAACACGATCTTAAGAATGACATAGTCGTAGATTTGCCAAATGGACATTCTCCGGAAGatttaaaatatgataatttGGAAAACGTCGAGATGACCCAAAACAAGGGTCCTGATTTGCTTTATGAATGTCCATTATGTGAATTTAAAGCAAATACTAAATCAGATTTAGGAAACCATGTTAAAATTCATATACTTGGGCCAAATAAGGAGATATTTAGAGATGCAGAATGTAAAGACAAAAATGACGATCAAAGTTTTCCGAAAAGGCATGACCCGGTTCATGAGAAAAATACAGATGTAGATCTGCATAAACATAAGAAAAGGTCATGTGTAAAAATGTACAAGTGtagtaaatgcgaatttaaggCTAGATGCCAGAGGAGTCTCAAgaaacacagtctagttcacaagaaTGCTTCAGAGGTCACGAAATACAATTGTCACAGATgcaaatttaaaaccaaatataAAGATAGCCTTAAACGCCATAGTCTTAGTCATAGGAATAGTCCAGACGTAGAAACTGAGGGCAAACAAATCTCTAAGGGTCAAAGTGTAAAAATGTTCAAATGCGATTTCtgcaattttaaaactaaacacAATAATTCTCTAAAAGAACATCTTCAGATTCATAGTAACACTTCGGGTTTATACAAATGTAACAAATGTGAATTTAAGACTAGACACCAGACAAGCCTTATGAGGCACAGTTTAGTTCATAAGAAAGCTTCAGAGGTGAGAATGTATGAATGTGGAAAATGCGAGTTTAAGACTAAACACCGGGACAGTCTCAAAACACACAGTCTTCTTCACAAGGACTTTTCGGAGGTGACAATTTTTGAATGTAGTAAATGCGAATATAAGACCAAACATCGAAATTATCTAGAGAAACATAGTCTTGTTCACAAAGACGCTTCGGAGGtgacaatgtacaaatgttgtaaatgcgaatttaagaccaaGCACCGGTATGCTCTTACGAATCATAATTTGGTGCACAAGAATTATTCAGAGGTTACAACCTACGATTGTGGGAAATGTGAATATAAGTCCAAATTCTTGAGAGAGTTAAAAAGACACAGTGTAGTTCATAAAAAGGCTTCAGACGTGAAAATGTACGAATGTAACAAATGCGAATTTAAAACCAGACATAAGAACAATCTTAAGAGGCATAGTCTACTTCACAAGAACATCTCAGAGGTAACAATGTACAGATGTGATAAATGCAAGTTTGAAACGAAGCATAAGGGAAACCTCAAAGATCATTTTCTTGCTAATAAGCAtagtgaaaaaacaaaaaattgtgagGCTTGTGGATACACATCGAAATGCGAAGAGGTTCTAAAGAGTCTTGGTTTAAAAGCGTTTAAATGCAAGATCTGCGAGTTTGAAACAGAACATAATAAATTTCTAACGGCACATTTTCGGATTCATCGGGATACTTCGGGTTTTTACGAATGTGGGAAATGTGAATATAAAACAGAACATAGAAAGAACCTTAAATCTCATTTTCTTCTCCATAAGCATAAGTTAAAGACCGACAAATGTGAAACATGTGGTTTTGCAGGTATATGCAAAGAGATCCTTAAGAGTCGCGGATTACAAACGTTCAAGTGCAATTTTTGTAGCTTTGAAACCACCCATAATGATTACATGACGTATCATTCTCGTATTCATAGGGTTACTCCCGCTTTGTACAGATGTGACAGATGTGAATACGAAACCAAACAAGGGAATAGATTCAAGATGCACAGTCTGGTTCATAAGAGTCCTTCAGAAGttacaatgtataaatgtgaaaaatgCGAGTTTAAGAGCAAATACCAGAATAACCTTAGGACACACAGTCTAATTCATAAGAAGGCTTCAAAAGCAAACATGTATAAATGTGACAAATGCGagtttaaatacaaaaacaagaaAGCTCTTAAGAAACACAGTGTGATTCACAAGAACGATTCTGAAGTAACGATGTATAAATGTGACAAATGTACATTTAAatctgaatataaaaaaaaccttgtaAAGCATTTTTCTGTCCATAAGCGAAGCGCAGAAAGAGACAAGTGA
- Protein Sequence
- MQGTKDLCRLCFTELSTCVEIIGDYMKELFEVLLLNVNLAISEYPVICQNCSELARRAFSFKSTCISTEEIILSHAVAKDVTSLDMKWIYHMEMAYEVTGNNNVCRFCMGYIGEDNYICLENIKCLPDDPLRRFLPEIEFDIVQPVACINCVELLMNYFKFASTCASVEEKINKYCEHEGTNSNGFVNFNDVVKFSCAEALKCAVTCDEMYINHTLSNDEDDEFKENDIQIEEHDLKNDIVVDLPNGHSPEDLKYDNLENVEMTQNKGPDLLYECPLCEFKANTKSDLGNHVKIHILGPNKEIFRDAECKDKNDDQSFPKRHDPVHEKNTDVDLHKHKKRSCVKMYKCSKCEFKARCQRSLKKHSLVHKNASEVTKYNCHRCKFKTKYKDSLKRHSLSHRNSPDVETEGKQISKGQSVKMFKCDFCNFKTKHNNSLKEHLQIHSNTSGLYKCNKCEFKTRHQTSLMRHSLVHKKASEVRMYECGKCEFKTKHRDSLKTHSLLHKDFSEVTIFECSKCEYKTKHRNYLEKHSLVHKDASEVTMYKCCKCEFKTKHRYALTNHNLVHKNYSEVTTYDCGKCEYKSKFLRELKRHSVVHKKASDVKMYECNKCEFKTRHKNNLKRHSLLHKNISEVTMYRCDKCKFETKHKGNLKDHFLANKHSEKTKNCEACGYTSKCEEVLKSLGLKAFKCKICEFETEHNKFLTAHFRIHRDTSGFYECGKCEYKTEHRKNLKSHFLLHKHKLKTDKCETCGFAGICKEILKSRGLQTFKCNFCSFETTHNDYMTYHSRIHRVTPALYRCDRCEYETKQGNRFKMHSLVHKSPSEVTMYKCEKCEFKSKYQNNLRTHSLIHKKASKANMYKCDKCEFKYKNKKALKKHSVIHKNDSEVTMYKCDKCTFKSEYKKNLVKHFSVHKRSAERDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -