Mmin018570.1
Basic Information
- Insect
- Molorchus minor
- Gene Symbol
- -
- Assembly
- GCA_029963825.1
- Location
- JAPWTJ010001133.1:54051-56821[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00087 0.08 14.2 4.4 2 23 242 263 241 263 0.96 2 12 0.088 8 7.9 2.4 2 23 271 292 270 293 0.94 3 12 0.011 0.98 10.8 3.1 2 23 303 324 302 324 0.93 4 12 0.034 3.1 9.2 0.2 1 23 333 355 333 355 0.97 5 12 0.068 6.2 8.3 4.9 1 23 364 386 364 386 0.97 6 12 0.0073 0.67 11.3 4.6 2 23 396 417 396 417 0.97 7 12 2.8e-05 0.0025 18.9 3.0 1 23 426 448 426 448 0.98 8 12 0.00044 0.041 15.1 0.7 1 23 457 479 457 479 0.98 9 12 1 95 4.5 5.8 1 23 484 507 484 507 0.95 10 12 0.013 1.2 10.5 4.8 1 23 516 538 516 538 0.96 11 12 0.00074 0.068 14.4 3.9 1 23 545 568 545 568 0.98 12 12 0.14 13 7.3 0.3 1 23 573 595 573 595 0.97
Sequence Information
- Coding Sequence
- atgctcattaaaaaagaaaatatttgtagACTGTGCCTTAATGGAGTAGATGGAGAATTTGAAGTAATAGACGAAGTCACTAGagaaatttttaacattttgttgTTGAATGTgGATGTTACTACAACAAAGGACCCCATCGTTTGCACGAATTGCTTTGACAAAATCCAAACGTTCTTTTCATTCAAATCCGTCTGTTTTTCATCAGAAGAACTTATAGCCACATATGTACGTTCGAAAGATGTTACACCAATTAACATAATGGATGTATTCCTTAAAAAACCTCAACCAGTGGACAGTGTCATTTACAAAGCTTATAACATATGCCGACTCTGCATGTATTGTGGAAAAGgtggtaatttttttagctTAAGTGCGTTAGAAGGATACATTGCAGACGAGGTTATTGCAAAGTGTATACCTGAAGTGAACTTGGCTATGACAAAATATCCGATGATATGCTCTCCATGTATTGAACATCTAAACACTTACTTCAATTTTCAACTAAACTGCAAAGAAACAGAAACAAGCATTAACAGTTACCGTGAAACCATAGAGTCAGGGGGAAGAATTAAAACAGAGCTAAATAACGTACTTacccatatttataaaaactgtttGGAGTACGACGATCCATTTAacaaaatagtaataaaaaaggagaaaaatgAAGGAGAAGAGTATACATTGACTGATTCTCTAGaaaataatgaagaaaaaattgAGTGTAACCTATGCACTTTTACATCGAAATATAAAAGTAATCTTCAACGCCACCAAAAACACCACAGGATCCTTGTTAAACGACTAAAATGCAACATTTGTCCGTATGAAGCAAGCCACGAGAAATATATTGAAAGACACTATAAGCTTCATCACGAAAACAACCCAAAAGGAAAAGTGTTAAAATGCAAGAACTGTTCGTACGAGACCACGAATAAGCCTCACTTAACAAGACACAATTTGCTACATAAAGATTTTTCTACAGTGACAACTTTCAACTGTAATATATGTCCATATAACACCAAATGGGCTTATATGCTAGATAGACATATCAACATACATAAGGAATTTTCTGAAGTTACGTTATATGCATGCAACCTCTGCTTCTTCGCTACTAAACACAAGTACAGCTACAGAAATCATTTATACACTCATAAAGAAGCGACTGAAATACCCATGCGGAGTTGCAAACTATGCAATTTCCAAACCAGACACAATGAAAGCCTGAAAAATCACATGCTTCGGCACAAAAATGCGTGGGAGATCAGCCTATATCGATGCGACAAGTGTGGTTACAAATCGAAGCTGAAAAACAACCTGAGGCGGCATATGAAGTTGCATAAGAATATATGGGAAGTACCGACGTATAAGTGTTACAATTGCCCGTATGAATCCAAAGAGAAGAGAAACCTAATTCGACACATGGTAATTCACAGAGAACCGATGTACAAATGTGAGGTTTGCTCGTTTAGAACCAGACACGCGACGTGTATCAGAGACCATATGAACTTCAAACATGGGAATCCCGCGGATATAGTTTGGTATAATTGTGAAAATTGTACCTTTAAAACCAAGTATAAGGATCATTTGAGGAAGCACACCCTGGGGCATATATCTGACGCATGCATGTATAAATGCGATATGTGTAATTATGCGTCAAAGTTTCGGTATTATTTGAAGTTGCATATGAAGAAGAAGCATGACGAGGTCAGGTTCGATTGTGAACTTTGTGAATATTCTACTGATGCCCTGAAAGACTTTAATTTGCATTTGAGGCTGCACAATAACGGGCTAAAGTAA
- Protein Sequence
- MLIKKENICRLCLNGVDGEFEVIDEVTREIFNILLLNVDVTTTKDPIVCTNCFDKIQTFFSFKSVCFSSEELIATYVRSKDVTPINIMDVFLKKPQPVDSVIYKAYNICRLCMYCGKGGNFFSLSALEGYIADEVIAKCIPEVNLAMTKYPMICSPCIEHLNTYFNFQLNCKETETSINSYRETIESGGRIKTELNNVLTHIYKNCLEYDDPFNKIVIKKEKNEGEEYTLTDSLENNEEKIECNLCTFTSKYKSNLQRHQKHHRILVKRLKCNICPYEASHEKYIERHYKLHHENNPKGKVLKCKNCSYETTNKPHLTRHNLLHKDFSTVTTFNCNICPYNTKWAYMLDRHINIHKEFSEVTLYACNLCFFATKHKYSYRNHLYTHKEATEIPMRSCKLCNFQTRHNESLKNHMLRHKNAWEISLYRCDKCGYKSKLKNNLRRHMKLHKNIWEVPTYKCYNCPYESKEKRNLIRHMVIHREPMYKCEVCSFRTRHATCIRDHMNFKHGNPADIVWYNCENCTFKTKYKDHLRKHTLGHISDACMYKCDMCNYASKFRYYLKLHMKKKHDEVRFDCELCEYSTDALKDFNLHLRLHNNGLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -