Mmin020672.1
Basic Information
- Insect
- Molorchus minor
- Gene Symbol
- RREB1
- Assembly
- GCA_029963825.1
- Location
- JAPWTJ010001408.1:77659-82555[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.061 5.6 8.4 0.1 1 23 78 100 78 100 0.96 2 10 4.2e-05 0.0038 18.4 1.9 1 23 109 131 109 131 0.98 3 10 0.0007 0.065 14.5 3.1 1 23 137 160 137 160 0.97 4 10 0.00051 0.047 15.0 3.1 1 23 537 560 537 560 0.97 5 10 0.00042 0.038 15.2 0.4 2 23 777 798 776 798 0.97 6 10 0.11 9.8 7.7 6.3 1 23 804 827 804 827 0.97 7 10 0.13 12 7.4 2.9 1 20 856 876 856 878 0.94 8 10 0.17 15 7.0 0.6 1 23 937 960 937 960 0.95 9 10 0.014 1.3 10.4 0.4 3 23 1007 1027 1005 1027 0.93 10 10 0.0064 0.58 11.5 5.9 1 23 1033 1055 1033 1055 0.98
Sequence Information
- Coding Sequence
- ATGAACATATCACAAAAAGTAATGGATAACACCAAGGATTTAGCTGATATTCAGTCCATCTTATCGAACATTAACTTGCAACAGCTCCATACTAGACAAAATGAACTGAGACTACCGACTCCCAAGTCCCATCAGGAACAACCCTTGGattaccaaaaccaaaaacacGAGGAAGAAGAGTCGCAAGATTTGTTCGCTGTCGAATTTAGAAAAATGAAATTGCGCGGCGAGTTCCCTTGCAGACTCTGCACAGCTGTTTTCCCGAACCTGCGGGCACTTAAAGGACACAATCGTGCCCATCTTAACGGAAATAGTAATGGTACATATCATTGTAACATGTGCCCCCATTCCTCGATTGACAAGGCAGCTTTAATCAGACATATGCGTACACACAACGGAGACAGACCATACGAATGCTCCCTTTGTAATTATGCCTTTACCACCAAGGCGAATTGTGAGAGACATTTGAGAAATCGGCACGCAAAAACAACCAGAGAGGAGGTTAAAAAATCTATCATTTATCATCCTTCTGAGGACCCCACTAACgacgatttaaataaattgaccGGTAATAAGGATGAACTGAAAAAAGTAAACGTCTCTTCTTCCTCAGAAGTGTGTGAGTTAATTCCAGACAAAATCCATTGCTCCACACCAAAAATTCCGGAAGTTGTTCGAAGTACTCTGGCGGAAATCAAGCCCGACATTAAAATGCCCAAACATAACGTGTCTCAAATGATCCCAGAATTACAGAGTTTCCAACCCCCTAAGAGGTATTCTAATATTAACAACATTATCCGTAACGAAAACCTTAGATCACTAAAAGAACAGAAAGTGATGCATAATGGAGCACATACAATATTTCAACCCAACTTTAACCTTTCCCTTCAAAAAATTCATGTAAGAAAGATGGTTGAGCTGAAAGAAATCTCTCCATACGAATCCGAAGAAGAATACATCGAGGAAGAAGAGCAACCCCTAGATTTGACTCcgccaccaccaccaccacctcAAAATACGATTACGCATCAATTACCCCCTAACATGGAAGAGATGTTTGCTCAGCAGTTACTGAAAGCACCTCCAAAAATCGATCCTGCTGCCGTTTATGCTACTCACCTAGCTCATCTGTACCGCACTGGTTTTCCTGCTCTCCCAAACTGGACCGGCTTTCCTCTTAACCCTTTGCTATTTCCCACTCTATCTCAGACTTTACCACAAAACCCCCAAGATATAAAAGAAAGAATGCAGAGGCTTCAGCTATGCGGAGGTTCTATGATTGCCGAGGAACATTTacagaattttcaaaacttacaaCAGCAATCGCTTTGCAGTGCTCCACTAAATTATAATGGCTTCAAATTAGAGCCACTGAAGCCTGACTTGAAAATGGAAAACGCGTTTTCCACTCCAAAGAAAACGGAAGAGTTAAAGCCGTTAAGTCTTAACGTAGACACCAATTTTGGTGATAATCTGACAAAGTTACAGAGCCCCATATCTCAGAATAAACCGGATCTGATGCAGTCACCCAACTCTGTGAAAATGGTCATCAAAAATGGCATCTTAATGCCAAAGCAAAAACAGAGACGATATAGAACTGAAAGACCTTTTACCTGCGAACACTGCTCAGCCAAGTTTACCCTGAGGTCCAACATGGAACGTCACATTAAGCAGCAACATCCCCAGTTTTGGTCGCAGAGACAAAGGGGAAGCGTGGGTAATCCTGGACGTAAAACTCAATCTATACCGATGAAACCGAGTTATTGCGACCTAAGCATACCAAATTATGAGATACCAAAGACTCAAGAATTTAACGATACCAAAGAACTGCTAAATGAAAAACTTAAATTCGCCATTTTGGCACAACAACTCAGAGCCAGCCAAAATATCAACCAAACGATGAAAAGAGACGAGGACGAAGACTGCGCCTTGGTCATTGATGAGAACGATGAGAAAAACGAACCAAAGACTGAGGACATCAACCAAAGAAACGATTACGAAAAAAGTCGCATTTTGGAAGGGAAACTTAAAGAAATGCGACAGTTCAAAGTTGAACCTAAAAACCCGAAAAATGAGGAAAGCCAAGATTTAGTACCTGTATCGAGACTTCTTGACAACGCTTCCCAACAACAATTTAAAGAATACTTTAAGAGGGAAGGTGAGGAACAAGAAGTTGGAGTAGCTAGTGAAGAGGATGAAGAGGGCCTTGTAGCGAGTGGGAGTACTAGTGAAGAAAACATCTCGGGAACGGATGAAAACAGatcGGAATCGGAAACCACCCaaccgacaaaaaaaaagtCAGCTTACTCCTTGGCACCCAATCGCGTCAGCTGTCCTTACTGTAGCCGTAAATTTCCTTGGACTTCTTCCTTGCGGAGACACATCTTGACCCATACTGGCCAAAAACCGTTTAAATGTAGCCATTGCCCTCTTCTCTTCACAACAAAATCGAATTGCGATCGCCATTTATTGCGTAAACATGGTAATGCAGCAACTACAATCGTCAATGATGCAGGCAACAACAATAACACAAATTACCTGATGAGAAACGTTCCGGAACGTCCATTTAAGTGCTCCAGCTGCCCTAGCAGCACGTTTTCGACATACTCTAACCTAAAAAAGCACATCAGCTGTAAACATGCGACCAATGCTCAAGGGGACGATATCAGAGCGCAGGGCTACGAAGCGGGCAGCTCCGAAGACGAAAAAATCCCGAACATCGAGGTACAGACTGATTGGGAATCTCAGTTGGCCTACAACAAATTAAACGTAGATTCGTCACAAACAGTACAAAACTCGGATCTACCATTTAAGTGCCATTTGTGCGAGGGTTCGTTTGCTGAACGACAAGACGCTTTGGATCATATCCGTGATAAGCACGCCTCCGAATACGATCTTTTAATATCAAAGAATGCTTTAGATGCCAATGCCACGACTCCCGACGACGTTGCTCATCAGGAAGATGATGACAGTGAAATTCGCGGGAAATTTCCAGACTATTCGAATCGTAAGGTAATCTGTGCGTTTTGTATGCGGCGGTTTTGGTCCGCCGAAGACTTAAGACGTCACATGCGTACACACACCGGGGAAAGGCCATTCAGCTGCGACATTTGCCGCCGCAGATTCACCTTAAAGCATAGCATGTTGCGGCACAGAAAGAAACACAACGTCAATTTTGATAACGATAATAATAACAGCGATGAAGATGGAACTTCCCCAATATTTAAAAGAGATAACAAAACTCCGTCACAAAAGAGCTCAGACAAAACCGATGAATCAGATTGTACCGAAGGAGGTGGAGATTTAATAAGCAATCTGTTGGGTTTGAGGGACAGATCAATAATTGACAAAGTATTGGCAGCTTCAGCAGACGATGCTGCTAAATTATTAGGGGTCAAAAATGGAATTAAGGAATAG
- Protein Sequence
- MNISQKVMDNTKDLADIQSILSNINLQQLHTRQNELRLPTPKSHQEQPLDYQNQKHEEEESQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNSNGTYHCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNDDLNKLTGNKDELKKVNVSSSSEVCELIPDKIHCSTPKIPEVVRSTLAEIKPDIKMPKHNVSQMIPELQSFQPPKRYSNINNIIRNENLRSLKEQKVMHNGAHTIFQPNFNLSLQKIHVRKMVELKEISPYESEEEYIEEEEQPLDLTPPPPPPPQNTITHQLPPNMEEMFAQQLLKAPPKIDPAAVYATHLAHLYRTGFPALPNWTGFPLNPLLFPTLSQTLPQNPQDIKERMQRLQLCGGSMIAEEHLQNFQNLQQQSLCSAPLNYNGFKLEPLKPDLKMENAFSTPKKTEELKPLSLNVDTNFGDNLTKLQSPISQNKPDLMQSPNSVKMVIKNGILMPKQKQRRYRTERPFTCEHCSAKFTLRSNMERHIKQQHPQFWSQRQRGSVGNPGRKTQSIPMKPSYCDLSIPNYEIPKTQEFNDTKELLNEKLKFAILAQQLRASQNINQTMKRDEDEDCALVIDENDEKNEPKTEDINQRNDYEKSRILEGKLKEMRQFKVEPKNPKNEESQDLVPVSRLLDNASQQQFKEYFKREGEEQEVGVASEEDEEGLVASGSTSEENISGTDENRSESETTQPTKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNAATTIVNDAGNNNNTNYLMRNVPERPFKCSSCPSSTFSTYSNLKKHISCKHATNAQGDDIRAQGYEAGSSEDEKIPNIEVQTDWESQLAYNKLNVDSSQTVQNSDLPFKCHLCEGSFAERQDALDHIRDKHASEYDLLISKNALDANATTPDDVAHQEDDDSEIRGKFPDYSNRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNVNFDNDNNNSDEDGTSPIFKRDNKTPSQKSSDKTDESDCTEGGGDLISNLLGLRDRSIIDKVLAASADDAAKLLGVKNGIKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -