Mmin017951.1
Basic Information
- Insect
- Molorchus minor
- Gene Symbol
- -
- Assembly
- GCA_029963825.1
- Location
- JAPWTJ010001058.1:36643-46803[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0024 0.22 12.8 0.4 2 23 75 96 74 96 0.97 2 18 0.00034 0.031 15.5 3.5 1 23 105 127 105 127 0.98 3 18 0.059 5.4 8.5 3.3 1 23 150 172 150 172 0.93 4 18 0.00085 0.078 14.3 5.9 1 23 181 203 181 203 0.98 5 18 0.00077 0.071 14.4 5.6 1 23 212 234 212 234 0.99 6 18 0.013 1.2 10.6 5.2 1 23 243 265 243 265 0.98 7 18 0.89 81 4.8 6.9 1 23 274 296 274 296 0.98 8 18 0.0037 0.34 12.3 0.4 2 23 362 383 361 383 0.96 9 18 0.02 1.8 9.9 5.3 1 23 392 414 392 414 0.98 10 18 0.1 9.6 7.7 0.8 1 23 520 542 520 542 0.97 11 18 0.039 3.6 9.0 1.5 1 23 551 573 551 573 0.98 12 18 0.034 3.2 9.2 3.4 1 20 582 601 582 606 0.90 13 18 0.44 40 5.7 0.9 1 23 638 660 638 660 0.93 14 18 0.68 62 5.1 3.9 1 20 669 688 669 693 0.89 15 18 0.022 2 9.8 7.5 1 23 702 724 702 724 0.98 16 18 0.017 1.5 10.2 3.7 1 23 733 755 733 755 0.98 17 18 7.1e-05 0.0065 17.6 2.7 1 23 764 786 764 786 0.99 18 18 0.0043 0.39 12.1 3.7 1 23 795 817 795 817 0.98
Sequence Information
- Coding Sequence
- ATGGATCCGGTTACTTGTACATCATGTATAGGACTACTGATGAGTTATTTAAACCTTGCTACAAGATGCGACGACATTCCCTATAACAACATCAGTATAAAGAAAGAAGATACTTTTAGTGACACTGAAAACAGTGCTAAAGGACTCGACGTCAAAGAAGGAATCTTCGGTGATTCACTAAATTTTAGCGAGGAATATGGACAAGATAAagtagaaatattaaaatgtgaGGTGTGTGAGTATGAAACGAAATATAAATCAGTTCTTACAAGACATTTACTGGTCCAtaaggatatttcagaggtgggaatgtataaatgtgaactGTGTAAATACGAGACGAAACATCAGCGAGGTCTTAAAAGGCACATGTCCGTTCACAAGGATAGTTCGAAAGGCATCAGGAGGCATATGTTGGTTCACaagaatatttcagaagtgggaCTGTATAAATGCGAAATTTGTGATTATGAAACAAATCATAAAGGCTATTTCAACATGCATTCTTCGTTTCATAAGGATATTTCAGACATGGAAACGTATAAATGTAAAGATTGTGGATATCAGACTAAACACAAACCGCATTTTAAAACTCATCTGTTGGTTCATAAGGACAATGCAGGGGtagaaatgtataaatgtgaaaagtgtGACCACCAAACGAAATATAAACATGGCCTTACAAGGCATATGTTGGTccacaaagatatttcagagGTTCAAATGTATAAATGCGGAATATGTGAACACCAGACGAAATACAAGAGACATTTTGAAACGCACATGTTGATTCACAAGGATGTCTCGGAAGTGGAGATGCATAGATGTGAAAAGTGTGATTACCAAACCAAATGTAAACGAGTCCTTACAAGGCATATGTTGACCCACAAGGAGGCTTCAGATATGGAAGTGTAcgaatgtgaaatgtGTAAAGACATTCCCTATAACAACATCAGTATAAAGAAAGAACATACTTTTAATGACACTGAAAACAGTGTTAAAGGACTCGACGTCAAAGAAGGAATCTTTGGTGATTCACTAAATTTAAGCAAGGAATGTGGACATGATAAagtagaaatattaaaatgtgaGGTGTGTGAGTATGAAACGAAAAATAAATCAGTCCTTACAACACATTTATCGGTCCAtaaggatatttcagaggtgAAAACGTATAAATGTGAACTGTGTAAATATCAAACAAAACACCAGCGAAGTCTTAAAAGCCACAAGTCTGTTCACAAGGATAGTCCGAAGTTCATCACAATGGATGACGTTGCCTGTACATCATGTATGGGGCTACTGACGAGTTATTTCAACTTTGTTACAAGATCTGAGAGTACAgaagagaaattaaaattatatcgtGAAAAGTCACAAAGTGGAACgatattaaaaatgaataatgTACCACCATTCGTAACTGAAGGCGTTCCCCATAGTGACAACAGTATAAAGGAAGAAAATACCTTTGATGTCACTGAGAACAGTGTTAACGGACTTGATATCAAATTAGGAATATTGGTAGATTCACTAAACTCCAACGAGATCGAGATATTTAAATGTGAAGAATGTGACTATGAAACGGCATGTATATCACTTCTTAAAACACATTTATTGGTTCAtagggatatttcagaagtgggattgtataaatgtgaaatgtgtgaatatcaaacaaaatataaacaagacATTAGACAGCATACGTTGGTACACGAGAGTAATTCACAAGTACACAAGTATAAATGTGAGAAATGCGATTACAGGACGAATCATAGAGGATACCTTAACATGCATTCGTCTTCGTCATTTCATAAGGACATTTCAGAAATGGAaacgtataaaaataaagattggGATTATCAAACTTATCTGTTGGTTCGTAAGGATAATTCAGAGATGGCAATTTATAAATGCGAAATGTGTGAGTATCAAACGAAATATAAACTGGATATTAAACAGCATCTGGTGGATCACAAGCATATTTCCGAAGTGTATATGTATAATTGTGAAAAATGCGATTACAAGACCAATCATAGGGGCTATTTTAACATGCATTCTTCTTCGTCATTTCATAAGGACATTTCAGAAATCGAAACGTTTAAATGTAAAGATTGTAAGTATCATACAACGTACAAACCACATTTTAAGACTCATCTGTTGGTGCATAAGGATAATTCAGAGGTAGAAATGTTCAAATGTGATTTGTGTGAACACCAAACGAAATACAAACATGCCCTTGGAAGGCATATGTTGGTTCACAAGAACATTTCAGaggtgcaaatgtataaatgtgaaatatgcgACCGCCAGACGAAATACAAGAGACATTTCGAAGCGCATATGTTGATCCACAAGGATGTCTCCGAGGTCGAAATGCATAGATGTGAAAAGTGTGATTATCAAACCAAATACAAACGAGTCCTTGTAAGGCACATGTTGACCCACAAGGACGCATCAGATATGGAAGTTTACAAATCCGTGCTCCGGTTATCTATTCTTAATCCTCCTGATACAACGGACGACAATCCACGAGAGAATATCGCGCCAATGGGCAGGATCGGCACAGTCAACCTTACTGTTACTGGAGACGAAAGAGAGATTGAACTCGTCGGTTTTAGACATCACAGAAAAGAATTTTGTGCAGACAACCAGACAGACATTGAGAAGTTTTCTACATACATCGACCCgaaaatacttttaatatttcCGTCTTTGTAA
- Protein Sequence
- MDPVTCTSCIGLLMSYLNLATRCDDIPYNNISIKKEDTFSDTENSAKGLDVKEGIFGDSLNFSEEYGQDKVEILKCEVCEYETKYKSVLTRHLLVHKDISEVGMYKCELCKYETKHQRGLKRHMSVHKDSSKGIRRHMLVHKNISEVGLYKCEICDYETNHKGYFNMHSSFHKDISDMETYKCKDCGYQTKHKPHFKTHLLVHKDNAGVEMYKCEKCDHQTKYKHGLTRHMLVHKDISEVQMYKCGICEHQTKYKRHFETHMLIHKDVSEVEMHRCEKCDYQTKCKRVLTRHMLTHKEASDMEVYECEMCKDIPYNNISIKKEHTFNDTENSVKGLDVKEGIFGDSLNLSKECGHDKVEILKCEVCEYETKNKSVLTTHLSVHKDISEVKTYKCELCKYQTKHQRSLKSHKSVHKDSPKFITMDDVACTSCMGLLTSYFNFVTRSESTEEKLKLYREKSQSGTILKMNNVPPFVTEGVPHSDNSIKEENTFDVTENSVNGLDIKLGILVDSLNSNEIEIFKCEECDYETACISLLKTHLLVHRDISEVGLYKCEMCEYQTKYKQDIRQHTLVHESNSQVHKYKCEKCDYRTNHRGYLNMHSSSSFHKDISEMETYKNKDWDYQTYLLVRKDNSEMAIYKCEMCEYQTKYKLDIKQHLVDHKHISEVYMYNCEKCDYKTNHRGYFNMHSSSSFHKDISEIETFKCKDCKYHTTYKPHFKTHLLVHKDNSEVEMFKCDLCEHQTKYKHALGRHMLVHKNISEVQMYKCEICDRQTKYKRHFEAHMLIHKDVSEVEMHRCEKCDYQTKYKRVLVRHMLTHKDASDMEVYKSVLRLSILNPPDTTDDNPRENIAPMGRIGTVNLTVTGDEREIELVGFRHHRKEFCADNQTDIEKFSTYIDPKILLIFPSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -