Mmin003303.1
Basic Information
- Insect
- Molorchus minor
- Gene Symbol
- -
- Assembly
- GCA_029963825.1
- Location
- JAPWTJ010000065.1:309160-312169[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.066 6 8.3 0.3 1 23 288 310 288 310 0.97 2 17 0.049 4.5 8.7 2.0 1 23 316 338 316 338 0.94 3 17 0.00018 0.016 16.4 0.9 1 23 347 369 347 369 0.98 4 17 0.0044 0.41 12.0 0.4 1 23 377 399 377 399 0.95 5 17 0.05 4.6 8.7 2.1 2 23 409 430 408 430 0.96 6 17 0.00045 0.042 15.1 2.0 1 23 483 505 483 505 0.98 7 17 6.9e-06 0.00063 20.8 0.5 1 23 514 536 514 536 0.98 8 17 0.00068 0.062 14.6 1.5 1 23 545 568 545 568 0.95 9 17 0.0038 0.34 12.2 5.1 1 23 577 599 577 599 0.95 10 17 2.2e-05 0.002 19.2 0.6 1 23 608 630 608 630 0.98 11 17 0.18 16 7.0 4.5 1 23 639 661 639 661 0.96 12 17 0.00076 0.069 14.4 3.5 1 23 670 692 670 692 0.98 13 17 0.0077 0.71 11.2 3.2 1 23 701 723 701 723 0.97 14 17 1.1 98 4.5 1.5 1 23 732 754 732 754 0.93 15 17 0.0074 0.67 11.3 3.9 3 23 765 785 763 785 0.98 16 17 0.0011 0.098 13.9 3.2 1 23 794 816 794 816 0.98 17 17 0.00028 0.026 15.8 0.4 1 23 823 845 823 845 0.98
Sequence Information
- Coding Sequence
- atgtttaaaatacaaaaagggGAAAATATATGTAGGCTGTGTCTCACGGAAGTAAAGGAAGACTTTGAAGTGATAGATGAAAATACCAAGGAAGTGTTTAAAATACTACTTTTGCATACCAATTTGGCCGTCTCCGAAGAACCCATTATATGCCACAGCTGCCAGCAGAATGTCCAGAAAGCAGCCGAATTCAAAACCGCCTGTATTTCCACACAAAATCTCATCAACATATATGCCATCGCAGAGGGAGCCACTGATTTTACTTTGAACGATGTTTACCAAAAGAAGCATAATGTTTCGGTGGCCGACGAACAAAAGGTGTGCCGTTTTTGCATGGCCTGTTCCGAAGAACAACATTTCATATCTCTAGATGCAATGAGAGAAGATGGCGTCCTGTCGGATGTCATGTTTCAGTTTCTTTCCTCCTGTCTACCAGAGGTTgacaACAAGATTATTAGGGAATCAGTGCTCTGCACCTCATGCATGGATTCTCTGACCAACTACTTTAACTTTTCCACATTCTGCGGTGCGACAGAGGAAAAGATCAATACGTATTGTCAAAGGGAAGGCACCAGCAGCAAAGGCATGGTAAAACTCAGCAACGTACTCAGATTCCTCTCCGAAGACACCTTCGGCGGTTGCCAGTCTAACAAAAGCTTCATAAAAGTGGAAGAAAACCAAGTCGTTGAGTCGGTGGAGGAGGAGGAAGATTTATTCATCGAAGATCCTACACAAAGCGACAAGAAAGCCCCGGAAAGTTCCACCTCCAAGGGCAATATTACTTTGCAAGACAAAGAGATCAAGGAGATGGAACTCTACCTGGACAAAATTAAAGGCAAGAAGAGCCTTCAGGGTTCGATCCATGAGTGTGAattatgtgattataaaatcGACGATGACGATGAATTCAGGCAACATCTTTTGATTCACAAAGACGCTGAGACCTACATCTGCGACATATGCGAATACACAACAATTCACAAGAAAACCTTTAACGAACACACGGCATTTCACAGAGAAATGTCCAAAGAGGACTCGTATCGGTGCGATTTATGCGAATATAGCACTAAAGAAAAGGAGAacttaaaaaatcatctttCGGTCCACAAGGACGAATCTGACGATAAGTACAGTTGCGAAAAATGCGAATACAAGGTAGAAAGTAAAAACGGGTTGAAACAGCATATGGTTGCTCACGGAGGTGATCCGGAAGTTGACTTACTTAAATGCGACCTCTGTGACTATCAGACCAAACACAAAGATATCTTGACCCGACACGTTTTACGTCACAAGCCGGACGAAGGAATAGAATTGTACAATTCATCTATTAATCCACCAGGGCATCTTGGAGGACGTCGAGACGTTAAAATGCAAACTCTGGGCTACGAAGCTAAACACCTGACGGGCATGAGGAAACACTGTTCGGTTCACGAGAGCGATTCGAGATACGTGTGCGATATCTGCGGCTTTTCCACGAAATACAAGTCGTCGCTGGATCATCACGTCACGAGACACCAGGAGGGGTCCGTGTTGAAAAAGTACGTCTGCGAAATATGCGGCTTTTCAACGGAATACAACAGCAACTTAAAGAAACATCTCCTGTCTCACAAAGGGGAATCCGAAGTCGACATGTACGAGTGCGACACCTGCGACTACAAAACCAAGTATAAATACAGCCTGATCAACCATATATCGCAACAGCACAAGGGAATCCCGGAGGTGAAGCGGTATAAATGCCACCTCTGTGGGTACGAGTCGAAGAACAAGTGTTCGCTAGAGCAGCACATGGTTTTCCACAAGAACAACTCTGAGACGCACATGTACCAGTGCGGAATATGCGGCTACGAGACCAAGTACAAGCGTAACCTCAAAGCCCACCAGCTGCTACACAAAGACACCACGGAAGTAGAAGTCTACGCGTGTACCACCTGCAAGTTCACCACCAGACACAAGCGGAGCTTCGGCCGACACCTGTTGCTGCACAAAAAAGACTCTGAAGTGGAAATGTACCGCTGCGAGCTCTGCAACTACCAATCCAAACACAAAGACAACCTCACCAAGCACAGCATGGTACACAAGAAGAACACCGATGCGGAACGGTTCCACTGCGACTTGTGCGGTTTCAAGTCCCGGTACAAAGTGAGCTTGAAGAAGCATCTGTTGCTGCACCGGGACCGCTCCGAGCTGGACCTGCACATGTGCGAGACCTGCGGCTATCAGACGCTGTTGAGGGAGAACCTGAAGAAGCACTCCCTCGTCCATAAGGATTCCTCCGAGGTGGATATGTTCGGCTGCGACTTCTGCGAGTACAAGACGAAGCACAAGAACAACCTCAAGACGCATCTGCTGACCCATATGGACCACCTGGAGGCGGCGATATACAAATGTCAGTCCTGTGATTTCATCACCAAGTACAAGACGAACTTGACGAAGCATCTGCTGCGCCACGAGAGGACGGCGGTGACGTACGAATGCCCGACCTGTGGGTACCGAACTATAAATAAGCGGGACTTTAAGGGGCATTTGAATATACACAAGGATACTTCCAAGATGGAGGTGGATGGTTAA
- Protein Sequence
- MFKIQKGENICRLCLTEVKEDFEVIDENTKEVFKILLLHTNLAVSEEPIICHSCQQNVQKAAEFKTACISTQNLINIYAIAEGATDFTLNDVYQKKHNVSVADEQKVCRFCMACSEEQHFISLDAMREDGVLSDVMFQFLSSCLPEVDNKIIRESVLCTSCMDSLTNYFNFSTFCGATEEKINTYCQREGTSSKGMVKLSNVLRFLSEDTFGGCQSNKSFIKVEENQVVESVEEEEDLFIEDPTQSDKKAPESSTSKGNITLQDKEIKEMELYLDKIKGKKSLQGSIHECELCDYKIDDDDEFRQHLLIHKDAETYICDICEYTTIHKKTFNEHTAFHREMSKEDSYRCDLCEYSTKEKENLKNHLSVHKDESDDKYSCEKCEYKVESKNGLKQHMVAHGGDPEVDLLKCDLCDYQTKHKDILTRHVLRHKPDEGIELYNSSINPPGHLGGRRDVKMQTLGYEAKHLTGMRKHCSVHESDSRYVCDICGFSTKYKSSLDHHVTRHQEGSVLKKYVCEICGFSTEYNSNLKKHLLSHKGESEVDMYECDTCDYKTKYKYSLINHISQQHKGIPEVKRYKCHLCGYESKNKCSLEQHMVFHKNNSETHMYQCGICGYETKYKRNLKAHQLLHKDTTEVEVYACTTCKFTTRHKRSFGRHLLLHKKDSEVEMYRCELCNYQSKHKDNLTKHSMVHKKNTDAERFHCDLCGFKSRYKVSLKKHLLLHRDRSELDLHMCETCGYQTLLRENLKKHSLVHKDSSEVDMFGCDFCEYKTKHKNNLKTHLLTHMDHLEAAIYKCQSCDFITKYKTNLTKHLLRHERTAVTYECPTCGYRTINKRDFKGHLNIHKDTSKMEVDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -