Mmin016050.1
Basic Information
- Insect
- Molorchus minor
- Gene Symbol
- -
- Assembly
- GCA_029963825.1
- Location
- JAPWTJ010000846.1:121981-124150[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.54 50 5.4 0.1 1 12 60 71 60 74 0.90 2 13 0.031 2.8 9.3 2.9 1 21 210 230 210 231 0.95 3 13 0.0089 0.81 11.1 2.9 1 23 239 261 239 261 0.99 4 13 0.00011 0.01 17.1 1.7 1 23 279 301 279 301 0.98 5 13 0.027 2.5 9.5 0.6 1 23 332 353 332 353 0.93 6 13 6.8e-05 0.0063 17.7 1.7 1 23 359 381 359 381 0.96 7 13 0.00013 0.012 16.8 0.5 1 21 387 407 387 408 0.93 8 13 0.0073 0.67 11.3 0.7 1 13 415 427 415 429 0.93 9 13 5e-06 0.00046 21.3 3.3 1 23 444 466 444 466 0.98 10 13 8.9e-05 0.0082 17.3 6.4 1 23 472 494 472 494 0.99 11 13 2.4e-05 0.0022 19.1 0.2 1 23 500 522 500 522 0.98 12 13 4.1e-05 0.0038 18.4 0.1 1 23 526 548 526 548 0.97 13 13 0.00019 0.017 16.3 0.1 1 23 556 579 556 579 0.96
Sequence Information
- Coding Sequence
- ATGCCTAATGATAATACATCAAATATGATTTTCATTAATCCTAAAGTAGAGATAACTGAGCCTGTCGAAGATGATGAGCAAACCAACAGTATTTTAGCTAGAGCTTTAATGGCGAAACACGTAACAAACGAGAGCGATATTGTGGGCGCTGAAGAGACTGACCAGGTGGTTGGTGTGTATACATGTCAGATGTGTAACGTTAGTTTTAATTCCATCGAGGAGCATCTGGAGAAGTTCCATGCCGGAGAAGAAATAATATTGgaGACAGAAGAAACCGTTCAACTGGCAGACGAAAACCAAGAAGCCGTAGAAGACGAAGAAGAGGTAACGACGGATGTGTATGATAGTATGTTTAGTCCGAGAGATGATGGTTCCGAAAACACCGAATCTGTTGTAGATGATGAAAAAACCCATACCGTTGAAGAGCAGCAATGTCTAGACAAAGCAGGTCGACTTTACACAAGAAAAGTAGTAAAAATCGACAAATTCTGGATTGAGAATCAACAGAAAAAGCAAGAGAAAAAAGGACCTATGACTGAAAAATATCTCCTAGAGAACGGGAAGATTCATAAAATCACCGAAGAAGAAGCCAAGCTCATAGACGATAAAGACGCCATAATACAAATTCACCAGTGCCCTACGTGCTATTTGCAATTCCCTAATATAGATCACTATAACAAGCACATCTGTGATCCGTCCAAAGTCAAAAACAAATTCAAATGCACCCACTGCACGGCAGTTTTCCTCAACTACCAATCGTTAACGGGCCATATGAAATCGCACATAACCAAAGATTCTTTCGGTAAGGTCAAGAGAGTTGTAACACTGGGACCATACTCTTGCGATGTATGTAAAACGATGTTTCCATCGTTTAAAAGTCTACGTTTACATCGAAGGATGCACGATCCTATCAAAGATAAATCACCAGAGGCTCCGGTAACCTACAGCATCACCGGACCTATAGACGACAGCAGGGAAATTGTCCGTCACATGTTTATCTGTAGCATATGCAACAAAACCTACGATAAAGAATATGAGGAAGTGCATATGAAATCGCACAATCAAGAAGATGATTACGATTGCACCATTTGTAATAGGAAATTTCACACCAAGGAAAATTTGGCGATGCACGTAAAGGCGCATAATAACGGGAAGAAATTTGCGTGTTCCTATTGTAAAAAGCCATTTACGACGTACGACGCCTTACAAGATCACGTCATGCACCAGTGTCAAAAACGGCAGTACGAGTGTCAATATTGCGGCAGACGCTTCTCGCGGCCCCCACGGAGAAAGTCAAAACACGAACGTATCCATACTGGAGAAAAACCCCACGTATGTCAAATATGCGGTAAGGCTTTCAGAGTAAGCTACTGCCTCACGTTGCACCTGAGGACTCACTCGGGTACCAGGCCGTATCAGTGTACGAATTGCGGTAAACGTTTCAAGTCTCATAGCGTTTACAATCACCACCTGCTCACCCACTCCGACGTCAGAGCGTATAAATGCCCTTATTGTCCCAAGGCGTTTAAAACCGGCGTGCAGCTGGCAGGGCATAAAAACAGCCACATCAAACCGTTCGCCTGTACGGAGTGCAACAGGCCCTTTGCGTCGTTGTACGCGGTGAGGGCTCACATGGAGACTCACAAGAGAGAGAATAACTTGAAATTTGATTGTTGGCTATGCGGTGCGACATACGCTAGGGCCTTCGCCCTCAGGGATCACATGAAGAGTCAGCACGTGGGGGAAAGTATGGATGTGGACGATAATGTTTTGATCGAGCTGGAGACTAACGAGAGTGCTAATCGACTGCAGAATGAGATGAAGATTTCGATGGAGGACCGAACAGATGAGGAGGAAGTGGCTTAG
- Protein Sequence
- MPNDNTSNMIFINPKVEITEPVEDDEQTNSILARALMAKHVTNESDIVGAEETDQVVGVYTCQMCNVSFNSIEEHLEKFHAGEEIILETEETVQLADENQEAVEDEEEVTTDVYDSMFSPRDDGSENTESVVDDEKTHTVEEQQCLDKAGRLYTRKVVKIDKFWIENQQKKQEKKGPMTEKYLLENGKIHKITEEEAKLIDDKDAIIQIHQCPTCYLQFPNIDHYNKHICDPSKVKNKFKCTHCTAVFLNYQSLTGHMKSHITKDSFGKVKRVVTLGPYSCDVCKTMFPSFKSLRLHRRMHDPIKDKSPEAPVTYSITGPIDDSREIVRHMFICSICNKTYDKEYEEVHMKSHNQEDDYDCTICNRKFHTKENLAMHVKAHNNGKKFACSYCKKPFTTYDALQDHVMHQCQKRQYECQYCGRRFSRPPRRKSKHERIHTGEKPHVCQICGKAFRVSYCLTLHLRTHSGTRPYQCTNCGKRFKSHSVYNHHLLTHSDVRAYKCPYCPKAFKTGVQLAGHKNSHIKPFACTECNRPFASLYAVRAHMETHKRENNLKFDCWLCGATYARAFALRDHMKSQHVGESMDVDDNVLIELETNESANRLQNEMKISMEDRTDEEEVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -