Mmin026554.1
Basic Information
- Insect
- Molorchus minor
- Gene Symbol
- -
- Assembly
- GCA_029963825.1
- Location
- JAPWTJ010002679.1:30304-32085[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9e-05 0.0017 19.5 0.4 1 23 128 151 128 151 0.96 2 13 0.15 13 7.2 0.2 1 20 174 193 174 195 0.94 3 13 0.02 1.9 9.9 1.9 1 21 209 229 209 230 0.94 4 13 0.015 1.4 10.3 5.3 1 19 242 260 242 267 0.97 5 13 0.00018 0.016 16.4 0.9 3 23 277 298 276 298 0.96 6 13 0.015 1.3 10.4 0.2 3 23 305 326 304 326 0.96 7 13 0.52 47 5.5 0.1 1 11 349 359 349 367 0.89 8 13 6e-05 0.0055 17.9 1.3 1 23 382 404 382 404 0.97 9 13 9.5e-06 0.00087 20.4 0.8 2 23 411 432 411 432 0.97 10 13 3.4e-07 3.1e-05 25.0 1.2 1 23 438 461 438 461 0.97 11 13 0.00052 0.047 14.9 5.2 1 23 469 491 469 491 0.98 12 13 2.9e-06 0.00027 22.0 0.5 1 23 497 519 497 519 0.97 13 13 0.0009 0.083 14.2 4.2 1 23 525 548 525 548 0.96
Sequence Information
- Coding Sequence
- atgcgCTCTGACTGTAGTATCTGTTTAGAAAAGAATCGTAGTGTTATAAAGAGTATAACTTCTGTAGacgaaaataatgtaaaaatatatgataaatTACGGTACATTGCTCCAGAAACTgattgGCTGCTAGACAATTacttaatatgtaatatttgtatAGAGCTGTTAAATAATGCCTGCAGATTTAGAGAACAGTGTTTATCAGTTAATGAGGAGCACAAGCAGGATTTTGAATTTAAGGGTGTGACTAAACACTTTCACAGCCAGGATCAAGAATATGATCAAGAGATAGATAATGATCACGCAGTTGAATACTGTGGATCGTTAAGTAGTGACGATGAAAAGTTTAAAGAAGAAGAAAGGACACAAAACTTATTTTTCATTTGTCATGACTGTGGAGAAAAATATGTCTCAAAAGTAGAGCTAGTAAAACATATTACAAGTGTTCACAATGTGTCTGGGAAATATGCAGACAATACTAGCGAATATCTTGGTGGGAAGTATAAAACCAAAGAATTTCACTGTTTGAAATGTGgaagaggttatgttttagaAACTACTCTAAACGAACACCTGGTAAACTGTGACGGGATAAGAAGACATGCGAAATCTGAAGCTGAATATCAGTGCAAtgggtgtaaaaaatattacactacggaaaaaattttaaagtccCATAGGAAAAGGTGCAAGTTAGAGTgtgaatacaataaaaacaaatatcagtGTACTAAATGCAATAAAAGCTACATCAGTTTAAAGACTTTAAGAGATCATTGTAAAAGAGGATGTAAAAAAGATAAAGATAATATTCAACTTGTGTTTTGTAAAACTTGTGATGAATATTTCAAGTCGCCTTTCTCGTTAAAGCAGCATATCTTATCGGAACATACaacagataataattattgtgctgATTGTCTGTTAAGCTTTGATAATAAAGTGGAATATGACaatcatataaatacaaaacattCTTCTGGTCCAGTTACAAATTCAAGTACAAACAAAAAGACTAAAGGTCGTGCAACTGCTAGAACATTCACTTGTGAAGTCTGCCGTAAGGAATTTAGTTTACTAAAGATCTTACTAGAGCATTGTATGCAAATTCATTCCATGGAGGAAAGAGCTATAAGACCGTACGCTTGTGATAAATGTGATAATCGATTTAGATCATCTACTAACTTAATAAATCATAGATTATACCATGACAGAAACCGTGTAAACACTTGCAGTTTTTGTGGGAAGAGCTTTATAACTAAAAACGATCTAACCGCCCATGAATATACACATTACAGTCACCGTAACTATAAGTGTGAAAAATGTGAAAAGGCCTTTAAAACCAATACAAACCTACGTACTCATCAACTGATTGTTCATACGGATTCTAGCCTATGGAAGTATGAATGCCATATCTGCAATAAACGCTTTCCTCAGAAATCAAACCACGACCAACATGTAAGAAGACATACAGGAGAGAAGAATTTTATTTGTCCTCTTTGTAGAAAACGGTTTGCCACCAAAAGCGAACTGCAAGAGCACATCAGTTACCACTCAAACGTCAGGGCTTATAAATGTCAGTACTGTGGCAAGGAATATCGAAAGAAACATACCTATGACGTACATTTAACCAAAATTCATGGTGTTGGAAATGCCAAAATACCAATAAGAGAGAAAAAAGCATGCCTGTCATATTTGTCCAAGCCGCTTTTTACGACAGGTTGA
- Protein Sequence
- MRSDCSICLEKNRSVIKSITSVDENNVKIYDKLRYIAPETDWLLDNYLICNICIELLNNACRFREQCLSVNEEHKQDFEFKGVTKHFHSQDQEYDQEIDNDHAVEYCGSLSSDDEKFKEEERTQNLFFICHDCGEKYVSKVELVKHITSVHNVSGKYADNTSEYLGGKYKTKEFHCLKCGRGYVLETTLNEHLVNCDGIRRHAKSEAEYQCNGCKKYYTTEKILKSHRKRCKLECEYNKNKYQCTKCNKSYISLKTLRDHCKRGCKKDKDNIQLVFCKTCDEYFKSPFSLKQHILSEHTTDNNYCADCLLSFDNKVEYDNHINTKHSSGPVTNSSTNKKTKGRATARTFTCEVCRKEFSLLKILLEHCMQIHSMEERAIRPYACDKCDNRFRSSTNLINHRLYHDRNRVNTCSFCGKSFITKNDLTAHEYTHYSHRNYKCEKCEKAFKTNTNLRTHQLIVHTDSSLWKYECHICNKRFPQKSNHDQHVRRHTGEKNFICPLCRKRFATKSELQEHISYHSNVRAYKCQYCGKEYRKKHTYDVHLTKIHGVGNAKIPIREKKACLSYLSKPLFTTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -