Mmin003279.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Molorchus minor
Gene Symbol
-
Assembly
GCA_029963825.1
Location
JAPWTJ010000065.1:191038-200455[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 6e-05 0.0055 17.9 1.1 1 23 146 168 146 168 0.99
2 20 0.49 45 5.6 1.1 1 23 177 199 177 199 0.98
3 20 0.00048 0.044 15.0 3.3 2 23 209 230 208 230 0.96
4 20 0.00023 0.021 16.0 1.6 1 23 365 387 365 387 0.97
5 20 0.0031 0.28 12.5 1.7 2 23 397 418 396 418 0.95
6 20 0.0001 0.0095 17.1 1.9 1 23 427 449 427 449 0.98
7 20 0.002 0.18 13.1 0.4 1 23 458 480 458 480 0.97
8 20 9.1e-05 0.0083 17.3 0.8 1 23 489 511 489 511 0.98
9 20 0.00016 0.015 16.5 1.4 1 23 520 542 520 542 0.98
10 20 0.00054 0.049 14.9 1.1 1 23 551 573 551 573 0.98
11 20 0.00018 0.016 16.4 0.8 1 23 582 604 582 604 0.97
12 20 0.0061 0.56 11.6 0.5 1 20 613 632 613 635 0.94
13 20 0.0055 0.5 11.7 2.0 1 23 644 666 644 666 0.98
14 20 9e-06 0.00082 20.5 1.3 1 23 675 697 675 697 0.98
15 20 0.0016 0.14 13.4 0.7 1 23 706 728 706 728 0.97
16 20 0.0025 0.23 12.8 2.0 1 23 737 759 737 759 0.99
17 20 6.4e-06 0.00058 20.9 0.8 1 23 768 790 768 790 0.98
18 20 0.00023 0.021 16.0 0.5 1 23 799 821 799 821 0.98
19 20 4.2e-05 0.0039 18.4 1.2 1 23 830 852 830 852 0.98
20 20 0.00062 0.057 14.7 3.1 1 23 860 882 860 882 0.97

Sequence Information

Coding Sequence
ATGGAATCTGCTGTCTGTGCATCGTGTTTGGACTCTCTGACTACTTATAACAACTTTGTAACGATATGTGAAAGTACAGAGGAGAGGATAAATTTGTATCATGATATGCAACAAGGCAGagccataataaaattaagcaatgTACTAACATTTTTAAGTAAAGGTATTTCCTATAATAATGTCAATATAAAGAAAGAAGGTACTCTTGATAATAAGGAGTACAGATTAAATGGGTCCGAAGTCAAAGAAGAAGTCTTGGATAAATATGAAGGTACAACATGTGATTATAAAATCAAACACAATATAAATCTTCAAAGAAGTATATCTGTTCACAAGGACATTTCACAAATGCAAATGTGTAAAAGCCCAATCAAACACGGAGGATATGTTAATAAGTATTTGTCGCATGAGAAAGATAATTTAAAGGTGCAAATGTATAAGTGTGAAATGTGTGCATATAAGACAAAACGCAAACCAGACCTTAAACGTCATATGCTGGTccacaaagatatttcagaagtgcaattGTATAAATGTGAAGTATGCGAATATTGGTCGAAACACAAAGGAGTCGTGAAACAGCACTTGCGGGTCCACAAAGATATTTTAGAAGTGCAACTCTGTAAATGCGAAATCTGCGACTTTCAGACGAGTCGCAAACGAGACCTTAAAAAgcacttgctggtccacaaggatatttcagagGGTTCAACCATCATGGATTCTGTTATCTGTGGATGGTGTGTGGACTTTCTGACTACTTATAACAACTTATTAACAATATGTGAAAGTACAGAGGAGAAAATACATTTATATCGTCATATGCAGCAAAGTGAATCCATAATAAAATTAGGCAGTATACTGACAATCTCAAGTAAAGGCATTTCTTATAATAATGTCAATATAAAGAAAGAAGGTACTCTTGATAATGGGGAGTACACTTTAAAAGGGCCCCAAATTGAAGAAGAAGTCTTAGAACATAGAAGGCTGAATGAAATTTCACCAATGCAGATGTGTGAAACTCTGACCAAACAGGGAGAAGACGTTGATAGGTATTTTCTCCACCATAAAGATAATTTAGAAGTGTATacgtataaatgtgaaatgtgtaaatATGAGACGAATCGCAAAGCAAACTTTAAACGGCATTTGGtggtccacaaggatatttcagaagtgcaaatgttgaAATGCGAAATGTGCGAATATCAAACGAAACGCAAACGCAACCTTAGACAGCACTCGCTGGTCCACGAGGGTATTTCAAAAGTGCCAACGTTTAAATGCGAAATATGTGAATACGAGACAAAGCGCAGGGGACACCTTAAACAGCACTTGCTGATCCACAAAGACGTCTCAGAACTGCAGTTGTATAAGTGCGAAATCTGTGAATTTCAAACGATACGCCAAGAAGGCCTTAAAAGGCACTCGCTGGTCCACAAGGACATTTCAGAAGTGCCAATGTTTAAGTGCGAGATTTGTGAATACGAGACGAAGCGCAAAGGGTACCTTAAGCAGCACCTGCTGGTCCACAAAGATGTTTCAGAGGTGCAGTTGTTTAAATGCGAAGTGTGTAAATATGAGACGAAACGCAAAAACGAGCTTAAACAGcacttgctggttcacagaGATGTCTCAGAAGTGCCAATGTTTAAATGCGAAATGTGTGAATACGACACGAAACGCAAGAGGGACCTCAAACAGCACGTGCTGGTCCACAAAGATGTTTCACAAGGCCAATTGTATAAATGTGAAGTGTGTGAATATGAGACAAATCGAAAAGGAAACCTTAAAAAGCATTCGCTGATCCACGACGATATTTCAGAAGGGCAATTATATAAATGTGAGATGTGTGAGTATGAGACGGAGAGCAGGAGGAACCTTAAGCAGCACTTGCCGGTCCACAAAGATATTTctgaagtgcaaatgtttaaatgcgtAAAGTGTGaatttcaaactaaacgcaagtggtACCTTCGACAGCACTTGCTGGTTCACAAAGGTATTTCCGAAGGACAattgtataaatgtaaaatatgtgaCTATGAGACAAATCGCAAAGGAAACCTCAACAAGCACTTGTTGaaccacaaggatatttcagatgTGCAACTGTATAAATGTGATGTGTGTGAATATGAGACGAAACTCAAAGGAAACCTCAAAAAGCACTCGCTGGTCCACAAAGATATTTCCGAACTGCAAATGTTTAAGTGCGTAAAGTGTGATTTTCAAACTAAACGCGAATGGTACCTTAAACAGCACTTACTAAcccacaaggatatttccgaAGGGCAATTGTATAAATGCGAAATGTGTGACTATGAGACAAATCGAAAAGACAACCTCAATAAgcacttgctggtccacaaggacatttcagaagtgcaatTGTATAAATGTGATGTGTGTGAATATGAGACAAGACTGAAAGGAAACCTTAAAAAgcacttgctggtccacaaAGATATTTCTGAGGTGCAACTGTATAAGTGTGAAACGTGTGAATATGAGACGAAGCGCAAAAGTGATCTTAAACAACACTTGCTGGTACACAAAGGTATTTCTGTGCAgttgtataaatgtgaaatatgtgattttaaaacaaaacgtaAAACATACCTTAAACAGCACTTTCTGGTCCACAAGGCTAATTAA
Protein Sequence
MESAVCASCLDSLTTYNNFVTICESTEERINLYHDMQQGRAIIKLSNVLTFLSKGISYNNVNIKKEGTLDNKEYRLNGSEVKEEVLDKYEGTTCDYKIKHNINLQRSISVHKDISQMQMCKSPIKHGGYVNKYLSHEKDNLKVQMYKCEMCAYKTKRKPDLKRHMLVHKDISEVQLYKCEVCEYWSKHKGVVKQHLRVHKDILEVQLCKCEICDFQTSRKRDLKKHLLVHKDISEGSTIMDSVICGWCVDFLTTYNNLLTICESTEEKIHLYRHMQQSESIIKLGSILTISSKGISYNNVNIKKEGTLDNGEYTLKGPQIEEEVLEHRRLNEISPMQMCETLTKQGEDVDRYFLHHKDNLEVYTYKCEMCKYETNRKANFKRHLVVHKDISEVQMLKCEMCEYQTKRKRNLRQHSLVHEGISKVPTFKCEICEYETKRRGHLKQHLLIHKDVSELQLYKCEICEFQTIRQEGLKRHSLVHKDISEVPMFKCEICEYETKRKGYLKQHLLVHKDVSEVQLFKCEVCKYETKRKNELKQHLLVHRDVSEVPMFKCEMCEYDTKRKRDLKQHVLVHKDVSQGQLYKCEVCEYETNRKGNLKKHSLIHDDISEGQLYKCEMCEYETESRRNLKQHLPVHKDISEVQMFKCVKCEFQTKRKWYLRQHLLVHKGISEGQLYKCKICDYETNRKGNLNKHLLNHKDISDVQLYKCDVCEYETKLKGNLKKHSLVHKDISELQMFKCVKCDFQTKREWYLKQHLLTHKDISEGQLYKCEMCDYETNRKDNLNKHLLVHKDISEVQLYKCDVCEYETRLKGNLKKHLLVHKDISEVQLYKCETCEYETKRKSDLKQHLLVHKGISVQLYKCEICDFKTKRKTYLKQHFLVHKAN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-