Mmin014198.1
Basic Information
- Insect
- Molorchus minor
- Gene Symbol
- -
- Assembly
- GCA_029963825.1
- Location
- JAPWTJ010000660.1:124711-132883[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 7.8e-05 0.0072 17.5 0.3 1 23 175 197 175 197 0.98 2 15 0.00048 0.044 15.0 2.2 2 23 204 225 204 225 0.98 3 15 1.6e-06 0.00014 22.9 1.2 1 23 231 253 231 253 0.98 4 15 0.0034 0.31 12.4 0.1 1 23 259 281 259 281 0.96 5 15 9.7e-07 8.9e-05 23.5 0.3 2 23 288 309 287 309 0.97 6 15 5.5e-06 0.0005 21.1 5.5 1 23 327 349 327 349 0.98 7 15 1.1e-05 0.00097 20.3 0.2 1 23 355 377 355 377 0.98 8 15 1.2e-07 1.1e-05 26.4 0.3 1 23 383 405 383 405 0.98 9 15 0.0032 0.29 12.4 1.1 1 21 541 563 541 565 0.89 10 15 8e-07 7.4e-05 23.8 0.3 1 23 571 595 571 595 0.96 11 15 6.5e-06 0.0006 20.9 2.6 3 23 603 623 601 623 0.97 12 15 0.00092 0.085 14.1 0.4 1 23 629 653 629 653 0.97 13 15 3.4e-06 0.00031 21.8 0.9 1 23 659 683 659 683 0.98 14 15 0.0001 0.0093 17.2 0.4 1 23 689 713 689 713 0.96 15 15 0.0012 0.11 13.8 0.5 1 23 719 742 719 742 0.96
Sequence Information
- Coding Sequence
- ATGGAATGTGATGAAAATTTAGAAAGCAGCTGGAAAACAGTAGATAATACGGGGAATAACTGTGAGCCATTAGGAAAATATGATAAGATGTGTAGAGCATGTTTAAATGAAACGGAAAATATGAGTTCAATTTATCACCCCGAGATTCAAAATATGTTCACTTTTTGTACTTCATTGGAAGTAAATAACGATGTAAAACTACCCAACTTAATTTGTACACAATGTAAATCGGAACTTTTAAAAGCTTATAATTTTAAGGATTTATGTAttaaatctaacaatattttaattgaatacaTGTCCAGGTATAAAATTGATGATATTGAAATCAATTTAAATGACTTATTAAGAACAGACCTGGGtgatacaaatataaatataaattgtgaTCTAGAGAAACATGACGGAAGCATTATAGACATTGTAAATGAGCAAATCAATGACATAATAGAAGAACACATTAATCAGTGTGACGATGATGATGACGATAATAACAGTTCTACTTCTGCAAGAGATAGTGTATATAAATGTGATAATTGTCCGGAAACTTTTAATTTGGAAGAAGATTTGAAAACGCATCAAATCAGCCATCCTAGCGATGGTGTACCAAAATGTACtttatgcaataaaatatttacagaaacgAAAGTCTTAAAAAGACATGTTCGTACCCATCTTAAATTGAAACCTTTCCCGTGTACGCTGTGCAGTAAAAGCTTTTCAGaatCTGGAAGTCTGACACGTCATTTGAGAAAACACAGAGGAGAAAAACGGCATATTTGCTCAGCCTGCGGTAAAGGTTTTTACGAAGCTAATGTTTTAGCTGTGCATATGAGGATACACACTGGGGAAAAACCGATAAGCTGTGATATTTGCAATAAGAAATTTTCAGATCCTGGTGGCTTAAGAAGTCACATGAAGTCCCACACGGGTGAAAGAAACCATAAGCACCTAAGAGTGCATAGTGGCGAAAGGCCTTTTGTTTGTCATACTTGCGGAAAATCTTTTACACAGaGTCACTATGTGAAGATCCACATGAGGCAACATACTGGAGAATTGCCATACATGTGCATGATATGCAATAAAGGATTTCCACAGAACAGCCAGATGGAAATTCATTTGAGGGTCCATACTGGAATAAAGCCATATATTTGCCAGgtttgcGGTAAAACTTTTGCACGGTCGGGCGATCTTAATACCCATTTGCGATCCCACACAGAAAATAGCGCAAGTGAATGTAGTAATGACAACCAAATAGTCTATTTGACTATTAATCAAGATGATGTTGCAACAGAAAGTTTTGAGCAGCCTGGAGCCAGCATACAAAATACGGAGGTTGATAATGCATCAACGTTTGActcaaatattaatataataacacTCGATGATGGCACTATGTTTATGACTACAGCTTCAGATGaaaacttcGATTCTATAGAGCCTGATGAGTTCATAACAAACGATAATGATCAAAATGAACAAAGCGTCGATGACAAATTTGCCGAGGACTCTGAAGATTGTAACTATGAGATTGTACAAGTAATTGATGAAAATCAGACTTATCAAGTGATATACAGATACGACCCTTCATCCGAAGAAGAAATAccagtaaaaaaatcttttatctgCTTACAAAATGGATGTGAGAAAATGTTTTATACTGAGGATGATTTAAATGTACACATGCGCTGTCATTTAGAGGTTAAACGTTATGCTTGTACTGTAGAAGGCTGCGATAAAGATTTTACTACTAATTATTCTTTGAAAGCACACATTCGTACACATACTGGAGAAAAGCCCTATGGCTGTGTACTGTGTTCAAAGTGTTTTAAGACTTCTGGTGACCTGCAGAGACATCTTCGAACACACACAGGAGAGAAGCCATTTACGTGTCCGATAGAAGGTTGTGATAAGTCATTTACTACGTCAAATATAAGAAAAGTCCACATCAGATCTCATACAGGAGAAAGGCCGTTCACCTGTAATTATCCTAATTGCGGTAAAGCATTTTCTTCATCTACAAACTATAAAAACCATGTGAGGATACATTCTGGAGAAAAGCCCTATGTGTGCAATGTTGAGGATTGCGGCAAACGGTTTACAGAATATTCCTCGCTTTACAAGCACAATTTGGTTCATCAGACAAGCAAACCCTTTGCGTGTGGATTTTGTGGACAAAATTTCAAACAGGAGTCCGCCGTGAAGTTACATAAAAGGGTCAAACATAATGTGATTGTGGCTAGTGATGATGACACCCCCGGTCGTCATCAATATCATAAAGACGTAGAAGAGGCGATCAATCAACAGATATGTGCAGAGTTCAATGCAGCGTATGCTTACCTTTCCATGGCTTGTTATTTTGGGCGCACCGAACTGGCCTTACCTGGATGTCAGGGGTTCTTTATGGATATGTGGGAAGAAGAACTAGAGCACGCtaccgtttttataaatttccaactGATGAGAGGGGCACATGTTCGTTTGGCTCCTATTAATGTCCCAGAGTCTCAGGATTGGAAATCCATTGTCAATGGGTTTGGTGTAGCTGTGGATATGGAAAAGCTGATAAAAGAAAAATTGTGTGGCGTCTTTCAAGTTGCAGAAAAACATAAAGATTTGCAAGTAATGGACCTTGTATCAACACAGTTTATGGAAGAACAGaatcgtTCAATCTGCGAATTATCTAGACTTTTAACAATGGCAAAAATGGCAGATAATCCTACTGGTGAATACCtatttgataaattattatacaataattttgtCGAAAAATCTAAAGATAATGCtatgtataaaacaaaattggatTTAAAAGAAGACAAGGtttataagtaa
- Protein Sequence
- MECDENLESSWKTVDNTGNNCEPLGKYDKMCRACLNETENMSSIYHPEIQNMFTFCTSLEVNNDVKLPNLICTQCKSELLKAYNFKDLCIKSNNILIEYMSRYKIDDIEINLNDLLRTDLGDTNININCDLEKHDGSIIDIVNEQINDIIEEHINQCDDDDDDNNSSTSARDSVYKCDNCPETFNLEEDLKTHQISHPSDGVPKCTLCNKIFTETKVLKRHVRTHLKLKPFPCTLCSKSFSESGSLTRHLRKHRGEKRHICSACGKGFYEANVLAVHMRIHTGEKPISCDICNKKFSDPGGLRSHMKSHTGERNHKHLRVHSGERPFVCHTCGKSFTQSHYVKIHMRQHTGELPYMCMICNKGFPQNSQMEIHLRVHTGIKPYICQVCGKTFARSGDLNTHLRSHTENSASECSNDNQIVYLTINQDDVATESFEQPGASIQNTEVDNASTFDSNINIITLDDGTMFMTTASDENFDSIEPDEFITNDNDQNEQSVDDKFAEDSEDCNYEIVQVIDENQTYQVIYRYDPSSEEEIPVKKSFICLQNGCEKMFYTEDDLNVHMRCHLEVKRYACTVEGCDKDFTTNYSLKAHIRTHTGEKPYGCVLCSKCFKTSGDLQRHLRTHTGEKPFTCPIEGCDKSFTTSNIRKVHIRSHTGERPFTCNYPNCGKAFSSSTNYKNHVRIHSGEKPYVCNVEDCGKRFTEYSSLYKHNLVHQTSKPFACGFCGQNFKQESAVKLHKRVKHNVIVASDDDTPGRHQYHKDVEEAINQQICAEFNAAYAYLSMACYFGRTELALPGCQGFFMDMWEEELEHATVFINFQLMRGAHVRLAPINVPESQDWKSIVNGFGVAVDMEKLIKEKLCGVFQVAEKHKDLQVMDLVSTQFMEEQNRSICELSRLLTMAKMADNPTGEYLFDKLLYNNFVEKSKDNAMYKTKLDLKEDKVYK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -