Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.2e-12 4.7e-09 36.6 0.0 1 39 36 75 36 79 0.90

2 4 1.4e-13 1.3e-10 41.6 0.1 1 39 90 128 90 131 0.95

3 4 8.2e-05 0.074 13.6 0.0 1 18 145 162 145 163 0.96

4 4 0.0065 5.9 7.5 0.1 1 15 168 182 168 190 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.2e-12	4.7e-09	36.6	0.0	1	39	36	75	36	79	0.90
2	4	1.4e-13	1.3e-10	41.6	0.1	1	39	90	128	90	131	0.95
3	4	8.2e-05	0.074	13.6	0.0	1	18	145	162	145	163	0.96
4	4	0.0065	5.9	7.5	0.1	1	15	168	182	168	190	0.87

Coding Sequence: ATGGATGTAAATAGTGAGGATCAAGTACCtggattaaaaaataatggtcATTCTGAGAATATTCACCATATACCTCGATCACATGGTGGTGGACCAAAGACCTGGACTCAGGAAGACATGGATATGGCCTTAGATGCCTTAAGGAATCACAATATGAGCCTCACAAAGgcTTCAGCCACTTATGGAATTCCCTCCACCACTTTATGGCAAAGAGCACATAGATTAGGTATAGACACTCCAAAGAAAGAAGGACCTACGAAATCGTGGACAGAAGAAAACCTTAATAATGCCCTTGAAGCTTTACGCACTGGGACTATTTCAGCTAATAAAGCTAGCAAGGCATATGGTATACCCAGCAgcactttatataaaatagcGAGAAGAGAAGGAATAAGACTGGCCGCACCATTCAATGCAGCTCCTACGACATGGACTCCTGAAGATCTAGAGAAAGCATTAGAATCGATCAGGACTGGTCAGACGTCCAATCCTACCCCTTGGTCTGAGGATGCGATGGGTGAAGCTTTGGAAGCTGTGAGATTAGGACACATCGAGGAATCAAATATGACTTCGGACAACTTGGAAGTTAACCAAGACAGCCAGTCGCAAATGGATGCCCATTCATTTGGCATGGACTACAATGCTGCGCCCCATCAGCAAATCCAGTACCAGAACCAGAACAGCTGA
Protein Sequence: MDVNSEDQVPGLKNNGHSENIHHIPRSHGGGPKTWTQEDMDMALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSNPTPWSEDAMGEALEAVRLGHIEESNMTSDNLEVNQDSQSQMDAHSFGMDYNAAPHQQIQYQNQNS

Sequence clustering based on sequence similarity using MMseqs2