Mang041299.1
Basic Information
- Insect
- Molanna angustata
- Gene Symbol
- -
- Assembly
- GCA_963576475.1
- Location
- OY754982.1:5446434-5447936[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2 2.6e+02 4.1 3.6 2 23 187 209 186 209 0.94 2 11 2.8e-05 0.0036 19.4 2.2 1 21 218 238 218 240 0.94 3 11 0.00015 0.019 17.1 0.8 1 23 246 268 246 268 0.97 4 11 1.2e-05 0.0015 20.6 0.2 1 23 274 296 274 296 0.98 5 11 0.00028 0.037 16.2 0.2 1 23 302 324 302 324 0.96 6 11 0.00047 0.061 15.5 1.2 1 23 330 352 330 352 0.98 7 11 5.7e-06 0.00074 21.5 0.9 1 23 357 380 357 380 0.97 8 11 2.7 3.4e+02 3.7 0.3 3 23 387 404 385 404 0.64 9 11 0.0018 0.23 13.7 1.2 1 23 410 432 410 432 0.94 10 11 0.085 11 8.4 0.3 1 23 438 463 438 463 0.92 11 11 9.9e-05 0.013 17.6 1.3 1 23 469 492 469 492 0.98
Sequence Information
- Coding Sequence
- ATGGAAATCACCAAAGACTTTACTTGTAGAGCCTGTTTACAAAGCTTCAAATTGGGAACCTCAATATTCTGTATATTCAATGAAAATCAGCTTCGATTTTGTGATATGATGAAAATATTCACCGGTATTAATATCACAGAAGAAGAATATCCAGATAAACTTTGTCAATCGTGCGAAATGGAAGTTCCCAACGTCtggaaatttgtaaatatgtgtCAAAAATCGGAaacttttcttcaaaaatattacgaggagcaaaaaataaaattagatcaAGAGGATGTGGTTATTAAATTGGAACTATGCGACGAAGGAAATATTTTGCATCTTCAAAATGAAACATCAGACAGAGAATACACTAAATCAGATTTATCTGATAGTGACAATAAAGTTTATACAAATAGTCCAAAGTCTGAACCAGAGGAGTTTTTGTATAGTTTAAAACGAAAATCCAAAAGAGCATACAAAgaaacaaaacaaagaaaaagtGTCAAAGAAACAAAAACTGATAAACAATATTCGAAGCGAAATAGAAAATCTCTCACCCATAATAAATGGAAGTGTGAGTGGTGTGAACATGTGACAGAGAGTGAGTGCCGTCTTAAAAAGCATTGGAAACAGCGGCATCCAACTGAATGGAGTCAGTTAAGGTATCCCTGCAAAGAATGTAATAAAGTGTTCAAAAGAAAAAACGATCTAATAGTTCACGGAAGATGCCACAGTGGAGAGAAGCCTTTCGCTTGCACTCAATGCAACGCAAGATTCTCTCAATCGGGAAGTCTCATGCTTCATTCCCGACGTCACACTGGAGAAACACCGTTTCGTTGCCCCGCGTGTCCACGATCTTTCTCTTCTGTAGGATCCTTGCGACGTCACGGAAGAGTCCATTCTGGAGAGAGGCCCTACTCTTGTGAATCGTGCGGTGCTCAATTCCCGCACGCCTCTTCCCTCCGCCAACATGCTGCGGTCCATTCGAACGCGCGTCCGCACCGTTGTCAGCTATGTCCCCGCGCTCTCAAATCCCGCCTGGCTCTACGCAACCACATGTTGACCCATGGCGAACGCGGTTTCGTATGCGAAAACTGCGGAAAGAATTTCTTCGTCAAAGCAAATCTCGACAAACACATGAAAAAGATGCACAACGACAAGGCTGGTGTTTGTCCAATATGCGCTAAGCCCTGTTCGGATCTAGAGAGTCACGCCACCCGACATTCTCAAGAGCCCCGTTTCTCGTGTGCTTTGTGTCCTCGCTCATTTACTCAGAAGGGAAGCCTTAAATTTCATCTCACTCAGCATGCAAACGCCGACAAGTACAAATGTGACGTGACTGGATGCACTAAAGCGTTCCCCAAACGAAATATGCTAGAATTTCACGTTCTTAAAATTCATTGTAACGAAACACCCTTTGTTTGTAAATATTGTTCCAATGGTTTTTATAGAATCAGTGATTTATCTAGACACATAAACACATTTCAtccaaatgaaaaaaatagtggcaaataa
- Protein Sequence
- MEITKDFTCRACLQSFKLGTSIFCIFNENQLRFCDMMKIFTGINITEEEYPDKLCQSCEMEVPNVWKFVNMCQKSETFLQKYYEEQKIKLDQEDVVIKLELCDEGNILHLQNETSDREYTKSDLSDSDNKVYTNSPKSEPEEFLYSLKRKSKRAYKETKQRKSVKETKTDKQYSKRNRKSLTHNKWKCEWCEHVTESECRLKKHWKQRHPTEWSQLRYPCKECNKVFKRKNDLIVHGRCHSGEKPFACTQCNARFSQSGSLMLHSRRHTGETPFRCPACPRSFSSVGSLRRHGRVHSGERPYSCESCGAQFPHASSLRQHAAVHSNARPHRCQLCPRALKSRLALRNHMLTHGERGFVCENCGKNFFVKANLDKHMKKMHNDKAGVCPICAKPCSDLESHATRHSQEPRFSCALCPRSFTQKGSLKFHLTQHANADKYKCDVTGCTKAFPKRNMLEFHVLKIHCNETPFVCKYCSNGFYRISDLSRHINTFHPNEKNSGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -