Mang008117.1
Basic Information
- Insect
- Molanna angustata
- Gene Symbol
- pol
- Assembly
- GCA_963576475.1
- Location
- OY754966.1:29287031-29306427[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0019 0.24 13.6 0.5 2 23 147 169 146 169 0.95 2 13 0.00094 0.12 14.5 0.1 2 23 174 196 173 196 0.91 3 13 0.00017 0.022 16.9 1.5 1 23 219 242 219 242 0.94 4 13 0.57 73 5.8 4.1 2 23 319 340 318 340 0.97 5 13 4.3e-05 0.0056 18.7 4.4 2 23 347 368 346 368 0.96 6 13 0.00078 0.1 14.8 1.4 1 23 474 497 474 497 0.97 7 13 0.00014 0.018 17.2 4.0 1 23 518 540 518 540 0.97 8 13 1.4e-07 1.8e-05 26.6 1.6 1 23 547 569 547 569 0.98 9 13 2.8e-07 3.6e-05 25.6 2.0 3 23 582 602 580 602 0.96 10 13 3.9 5e+02 3.2 0.6 1 8 608 615 608 616 0.92 11 13 0.044 5.7 9.3 0.3 9 23 1135 1149 1133 1149 0.95 12 13 4.8e-06 0.00062 21.8 1.7 1 23 1155 1177 1155 1177 0.99 13 13 0.024 3.1 10.1 0.0 1 23 1183 1207 1183 1207 0.93
Sequence Information
- Coding Sequence
- ATGGCGGATGTGGACGATCCGTCTGGTATTGAAATTGATTTAGAAAATGTAGTGGAAGGTGATGGATTACCAAAACACATTTGCATGCAATGCTTCAACAGTGTATCAATAGCATTTGCTTTCAAGCAACAAGCAGAAAGAGCTGATGCTAGGCTTAGGGACTATATTATTAGGAGACATCCTAATATCATAGTTTCACAATACAATTCCATTAAAGAAGAGCATTCGGGTGAAGTTTTTGTTAAAGACGAGGTAAAAAATGGagatttcaataatttttcttCAACTAATGATTTTGAATCATTTCAAGACCATTCAGATGAATCTGAAGATGACAGTCGACCACTTAAAGAATTTCAGATTGAAAAGGAAAAGAAAACTCAATCAAACGTAGAAAACCAGCAGACAGAAGGAACAGAAGAAGTGAAGACAGATTTGAATTGTGAATACTGCAATATGACATTTGTTGATTCATTGAGTTtagaaacacataaaaataaggAACATGTTGGTTATGTACAATGTGACATATGTTATAGAGCTTTTACTACAGAAACATATTTGGAACGACATAAAATCGCTGCTCATTCAAAAGTTCCTACTAAAAGTATCTCTAAATCTAATGCTTCTTCCGATAAGAAATCTGATTCAGGATATATATGCAAATTTTGTAATTATACATTTAAGAGAGAAGATCAACTGATAACTCATTTAACTTTGTCACATAATGAAAAATGTGGACCAAGAAAAAGAGGGAGACCATCCAAGAAAGATATCTTAGCAAAAAAATTACGATTAAAAGGCATACTAGAAACAatgaaaataaaaaccgaaGAGAATGATGAAAATGAAAGTGGTCATAGTTTGTCAATAGTTAACGACCAAAACAATTTAATAGATGATATATCTAATCCTGAAATACAAGTAGACATGAATTTAATAGATGAAAAAGATTATTGTCACATATGCTGCAAGTCATTTGGATCCTTTGTTGTTTTAGAAAAACACCTTAAAAAACATTTGgagaGCCAACCATGTATTTGTAAATTGTGCGATAAAAGTTTCACGAAAATGAGCTATCTGAAAAAACACATATCAACTCATGATACTATAGACTCGATGACGAGTGCTGATATAAAAGTAAAATCATTATTACTGGCTGATCACGAAAAGgttATTAGCATCAAAACTGAAGATTTAACTGACGATGTACtttcttatataattattgaagACATCAAATTAGGCAAAATTGAAAGATACATAAATGAACCTAAAGTGGAGAAATTTGAGCCTGATTGTGATTCAAACGATGGGATGGTTGACAACGGTGATAGTGAATGTGACAAAGTGGTGTTTCCCAATGATGAAATTCTTTCAAAGCATAAACGCATGCAGTGCGAAAACATTACTAAACCATACCAATGTGGAACGTGCACTATGAAGTTTACATATGAAATGTCCTTGAATAAACACATTCTCAGAAACCATAAGGGGGAGGCCGTGTCTGTCAACTTCATAGATCCACTCTttcaaaagaaagaaaaaacattTGTATGCTCCACGTGTAATAAATCGTTTTATAGACAAGAGCATCTTGATAAACATTCCAAAATACACATGCCAAATGAGAAGAAATTTGAATGTCCAATTTGTCAGAAGAAATTTAACCGTAAGGATAATCTaagATCTCATACTCGAGTACATGAACCAAATAAAGAAGACTTGGAATCTAACTGTCTCTGTGTATACTGTGGTCGCTCATTTTCCAACTCTTCCAATCTTATAGTTCATATGCGCCGACATACCGGTGAAAAGCCTTACAAATGCGACATTTGTGATAAagCAGATCAAATCAAAATGGATCACATTGCCAGTGCATTCCGGGAAAAGAACTTTGTGGCATTCTGGAAGAGGACAAACGCTAGTATGAAAACTCAAAGCACTACTCCAAGCCACGTCGACGGTGTGACATGCAAGAAAGGGATCGCCGAAGTATTCAGAAAAAATCTCTCAGGAGAAGGAAGCCTGCGAATGCACAATCCTGAATGTATATCCAACATTCCAGATATGTCAGTTAAAGTGACGACCGACATAGTTCAGACTGTGATAAATGATATGGCAGGCGGTAAGTCTCCCGGACATGATGGCCTTTCGATCGAGCATATTAAGAATGCGGGGCATTACCTTATAGAGCTACTATCGTCACTCTTCACAGCAATGCTAGCGCTGGGTCACCTACCCGCAGAGCTGACAAAAACGGTCATAGTCCCCATAGTGAAAAATAAACAGTTGGACCCTTCTTCATCTGTAAATTATAGACCCATATCTCTGGCTACTATTATAGCcagaatatttgaaaaagtaATTCATGTCTATATACAAGGCAAACTTGTAACCCAAGATAATCAAATGGGGTTTAAGTCTGGATGTTCCACAGATACCGCAATCTTCAGCGTCAAGCAGACCATCGAATATTATAAGAATAGAAGAACGACCGTCTATGCCTGTTTTCTGGACCTGAGTAAGGCATTTGATAGAGTGGTGCATAGTACCCTTTGGTTAAAGCTGCATGCCAGAGGAGTTCCTGCCCCTTTCATCAGAATTCTGGAAACCTGGTACAGACAACAAGATAACGTGGTGAAATGGAATGGAGAAAGCTCCGAGCCATTCGCGCTGACTAGCGGCGTGAGACAGGGAGGATCTATGTCTCCAGTtctttttaatgtatatatggATAAGTTGAGTGAGACCCTGCTTAGTTGTCAAGTTGGCTGTCGGATGGCCGGAATCTGTGTCAACCACGTAAGTTACGCGGACGACATGGTGTTGCTGGCCCCCTCCATCAAAGCTTTGCGTAAATTGCTGAAGATTTGCGAAGACTATGCAGGTAAGCATAATCTTTTATACAATGCCAAGAAATCAGCGCTCATGATTTTTCGCGGGGACTCACCTCCTGACAATGTCCTCCCAGTAACATTGAACGGTCAAATTTTAGAGGCCAGTAGTAGCATCAAATATCTTGGGCATGTTATGTGTGACGacttaaatgataataaagacattgaaaggcaGAGGAGGGCCATTAGTGTAAGGTCTAATATGCTTGCCAGGAAGTTCACTAGATGCAGTGACAATGTaaagaaatatctatttatcACATACTGTACTAATCTGTATACAAGTGAGCTGTGGTGTAGACACACATGTCAGTCCTATAATTCTATGagagtacaatataataatgccTTTCGGATAATGTTCGGGTTACCCAGATTCAGCAGTGCATCTCAAATGTTTGTAGAGCGCGGGGTCCATGACTTTGCCACTCTCCAAAGACGCAAGATAGCTGCTGCAAGAATGAGGATGTGGAGATCTAGCAATTCTATTGTTCGAGAGGCTAGTTTCTCTCGTTCCAATAAACTGGTGAGACACATGCGAATCCATACTGGCCAACGCCCCTATAAGTGCACTTTTTGTGATAGAGCTTTCACTCAATCCAATGACCTCACTCTTCACGTACGAAGACACACTGGAGACAAGCCATATGTCTGTGGGGTCTGTGGAGATCGCTTTATACAGGGCACAGCATTACAAGCTCACCGGAGAATGCAAGGTCACTTTGAACAGGTGAATCAGCCAACACCGTTTGCTGCTAATTCAGTAAACAACCCAAGTAGAGATAATGGTCCACATAGAGTGGCAAGAGTCGGTGTTAGCAAACCTGAgGTTTGTACAACATCTTCTGTCAACAATTCCACAACATCAACAACTTCAACTACTAGTACAAATCCATTTATTCGTACAgTTCCATCACAAGGAAGAAGTACATCCAATAGTTATGTAGCTAACGGCATAGCCAATTTTCTTACAACACCAGTTTTAATGCAGAATTTGGATGTTGCTAGTGGTATATCTAATTTACCACTCTTATCATTATCTCAGTATAATCAAGGATacaattaa
- Protein Sequence
- MADVDDPSGIEIDLENVVEGDGLPKHICMQCFNSVSIAFAFKQQAERADARLRDYIIRRHPNIIVSQYNSIKEEHSGEVFVKDEVKNGDFNNFSSTNDFESFQDHSDESEDDSRPLKEFQIEKEKKTQSNVENQQTEGTEEVKTDLNCEYCNMTFVDSLSLETHKNKEHVGYVQCDICYRAFTTETYLERHKIAAHSKVPTKSISKSNASSDKKSDSGYICKFCNYTFKREDQLITHLTLSHNEKCGPRKRGRPSKKDILAKKLRLKGILETMKIKTEENDENESGHSLSIVNDQNNLIDDISNPEIQVDMNLIDEKDYCHICCKSFGSFVVLEKHLKKHLESQPCICKLCDKSFTKMSYLKKHISTHDTIDSMTSADIKVKSLLLADHEKVISIKTEDLTDDVLSYIIIEDIKLGKIERYINEPKVEKFEPDCDSNDGMVDNGDSECDKVVFPNDEILSKHKRMQCENITKPYQCGTCTMKFTYEMSLNKHILRNHKGEAVSVNFIDPLFQKKEKTFVCSTCNKSFYRQEHLDKHSKIHMPNEKKFECPICQKKFNRKDNLRSHTRVHEPNKEDLESNCLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDICDKADQIKMDHIASAFREKNFVAFWKRTNASMKTQSTTPSHVDGVTCKKGIAEVFRKNLSGEGSLRMHNPECISNIPDMSVKVTTDIVQTVINDMAGGKSPGHDGLSIEHIKNAGHYLIELLSSLFTAMLALGHLPAELTKTVIVPIVKNKQLDPSSSVNYRPISLATIIARIFEKVIHVYIQGKLVTQDNQMGFKSGCSTDTAIFSVKQTIEYYKNRRTTVYACFLDLSKAFDRVVHSTLWLKLHARGVPAPFIRILETWYRQQDNVVKWNGESSEPFALTSGVRQGGSMSPVLFNVYMDKLSETLLSCQVGCRMAGICVNHVSYADDMVLLAPSIKALRKLLKICEDYAGKHNLLYNAKKSALMIFRGDSPPDNVLPVTLNGQILEASSSIKYLGHVMCDDLNDNKDIERQRRAISVRSNMLARKFTRCSDNVKKYLFITYCTNLYTSELWCRHTCQSYNSMRVQYNNAFRIMFGLPRFSSASQMFVERGVHDFATLQRRKIAAARMRMWRSSNSIVREASFSRSNKLVRHMRIHTGQRPYKCTFCDRAFTQSNDLTLHVRRHTGDKPYVCGVCGDRFIQGTALQAHRRMQGHFEQVNQPTPFAANSVNNPSRDNGPHRVARVGVSKPEVCTTSSVNNSTTSTTSTTSTNPFIRTVPSQGRSTSNSYVANGIANFLTTPVLMQNLDVASGISNLPLLSLSQYNQGYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -