Mang053951.1
Basic Information
- Insect
- Molanna angustata
- Gene Symbol
- -
- Assembly
- GCA_963576475.1
- Location
- OY754989.1:4820319-4821611[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0002 0.025 16.7 0.7 5 23 90 108 87 108 0.93 2 12 0.00077 0.099 14.8 0.9 1 23 114 136 114 136 0.94 3 12 0.0061 0.79 12.0 0.9 1 23 142 164 142 164 0.96 4 12 0.004 0.52 12.6 0.6 1 23 170 192 170 192 0.97 5 12 9.3e-07 0.00012 24.0 0.6 1 23 204 226 204 226 0.98 6 12 0.014 1.8 10.8 2.5 1 20 232 251 232 254 0.94 7 12 0.0016 0.2 13.8 1.7 1 23 260 282 260 282 0.98 8 12 1.5e-07 1.9e-05 26.5 0.9 1 23 288 310 288 310 0.99 9 12 1.4e-05 0.0018 20.3 3.8 1 23 316 338 316 338 0.99 10 12 0.00051 0.066 15.4 1.0 1 19 344 362 344 366 0.96 11 12 3e-08 3.9e-06 28.7 0.6 1 23 372 394 372 394 0.98 12 12 0.008 1 11.6 0.7 1 23 400 422 400 422 0.98
Sequence Information
- Coding Sequence
- ATGGATAATAGTATAAGAATCAAAGCAGAACCAGAGGATACCTCATACGGGAAAGAAAGCGACAGCAATGAGTTGATTGTTCCAaaagcagaagaagaaaaatattatatgatacaCGATGATATTGAATCAACGAAGTTTCGGGAACTTGAAATTGAATTCGTCAAACAAGAATGCACAACGCAGGCTGATATTCAAACGGAATCAACTCCTACAGTCGTATTAAGTAGAAATGTTAAAgataaaaagattaaaaaattcaaatgtcaATGCGGCAAAGCCTTCTCTCGGGCCTCGTATTTGACTAAACATTCGATCATACATTCGGGagataagaaatataaatgtgaGCAATGCGGGAAGGCATTTCTTCGACTGTTCTATCTGCAGAAACACAGCGTGATTCACACGGGAGAAAAGAAATACGAGTGCCTGCAATGCGGCAAGTTATTCTACCGAGAATATCAAGTAAAGTATCACAGTTTGATCCACACGGCCAAAAAAACTTTTCAGTGTTTAAAATGCGGCCGACTGTTTTTGCGGCCGAACGAACTGAGGAAGCACAGCTTGATCCATATGCCGAAGTCGCCCGACTACGAAGCCAACCAATACAAATGCTTGCAGTGCGACAAAGTCTTCTATCGGTTAGCCAACCTGAAGACGCACATTGAAGTTCACGAAGGCAAAAAGAAATTTGAATGCTCTCAGTGCGGCAAGCCTTTCCTTCGGTCGCGCGATATGAAAAGACACGAGCTGTGCCACACcggtgaaaaaatatataaatgcctCCAATGCGACAAGGGTTTTCTTCAAGCGCGCTATCTCAAGAAACACAGTTTAACTCACAGAGTAGAAAAAGATTACAAGTGCGAAGAatgtggaatatatttttctcgATCCGACAGTCTTAGAAAGCACCTTCTGACTCACATCAGTGAAAGACCTTTCAAATGCGAAACATGCGGAAAGTCGTTTCTCCAacaatttcatttaaaacaacACATTTTGACACATAATGGAGAAAAATCATTTAAATGTGATCAGTGCGGGAAGACCTTCCTTCAGTCGGCCTACTTGAGAAAACATTCTTGGATTCATTTGACAGAAAAACTGTTTGAGTGTCCGGAGTGTAAAAAATCTTTCGTCAGATCTGCttatttaaaaaagcacatGTTGGTTCATACAAAAGAGAAATCATTTAAATGTTTGCTTTGTTCCGACGATTTTGTTAGTAAGCAGGAGTTGAAAAATCACTTATTAAGTCATACTGATAACATAACCTGTAATATTTAG
- Protein Sequence
- MDNSIRIKAEPEDTSYGKESDSNELIVPKAEEEKYYMIHDDIESTKFRELEIEFVKQECTTQADIQTESTPTVVLSRNVKDKKIKKFKCQCGKAFSRASYLTKHSIIHSGDKKYKCEQCGKAFLRLFYLQKHSVIHTGEKKYECLQCGKLFYREYQVKYHSLIHTAKKTFQCLKCGRLFLRPNELRKHSLIHMPKSPDYEANQYKCLQCDKVFYRLANLKTHIEVHEGKKKFECSQCGKPFLRSRDMKRHELCHTGEKIYKCLQCDKGFLQARYLKKHSLTHRVEKDYKCEECGIYFSRSDSLRKHLLTHISERPFKCETCGKSFLQQFHLKQHILTHNGEKSFKCDQCGKTFLQSAYLRKHSWIHLTEKLFECPECKKSFVRSAYLKKHMLVHTKEKSFKCLLCSDDFVSKQELKNHLLSHTDNITCNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -