Basic Information

Gene Symbol
-
Assembly
GCA_963576475.1
Location
OY754983.1:11733164-11761553[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.0086 1.1 11.5 0.1 1 21 265 285 265 286 0.93
2 20 0.00018 0.023 16.8 3.6 1 23 311 333 311 333 0.97
3 20 0.019 2.5 10.4 0.5 3 23 460 481 458 481 0.94
4 20 0.0095 1.2 11.4 0.3 2 23 489 511 488 511 0.94
5 20 0.00082 0.11 14.7 0.9 1 21 543 563 543 564 0.94
6 20 0.51 66 5.9 3.7 1 21 587 607 587 609 0.79
7 20 0.00046 0.06 15.5 1.0 1 23 615 637 615 637 0.98
8 20 0.0024 0.31 13.2 1.5 1 23 643 665 643 665 0.97
9 20 0.00084 0.11 14.7 4.2 1 23 671 693 671 693 0.98
10 20 0.0086 1.1 11.5 0.1 1 21 966 986 966 987 0.93
11 20 0.00018 0.023 16.8 3.6 1 23 1012 1034 1012 1034 0.97
12 20 0.019 2.5 10.4 0.5 3 23 1161 1182 1159 1182 0.94
13 20 0.0095 1.2 11.4 0.3 2 23 1190 1212 1189 1212 0.94
14 20 0.00082 0.11 14.7 0.9 1 21 1244 1264 1244 1265 0.94
15 20 0.51 66 5.9 3.7 1 21 1288 1308 1288 1310 0.79
16 20 0.00046 0.06 15.5 1.0 1 23 1316 1338 1316 1338 0.98
17 20 0.0024 0.31 13.2 1.5 1 23 1344 1366 1344 1366 0.97
18 20 0.00084 0.11 14.7 4.2 1 23 1372 1394 1372 1394 0.98
19 20 0.0014 0.18 14.0 0.3 1 23 1400 1422 1400 1422 0.98
20 20 0.0062 0.8 12.0 3.0 1 23 1428 1450 1428 1450 0.97

Sequence Information

Coding Sequence
ATGGATACACCTAATATACTTTCACCTATTAATGCCATTCAAAAGTCAGACGAAATCACAGAATCCAATATTACAATGAAGTATGTTTCGCTTGATAATTCATCTGgACAACACAAAGACTCAATGGAAGGACTCAGTTCTTCAATTTTTACCATCAAATTCATATCAGAGACCATTGAGAAGATAATTGAACTACTTGATGAGTTAGTTGCGAGAGATAAAAACAGATCAAGAGCAGATAGCGTGAAGAAGGGCGTGTTGGAGGCCATCTCCTGCTACCAAATCCTGATTGACAACCCAAAACTGCTCAATAACAAAGacagtgttatattttttattaatgtaagtTCTACTGAATCTGCATCACCAAACAATCCCAACGAAGAAAagctaaatatttcaaaagacaATTCTGAATCTGCACTGAAAGGGagcaaaagtaaaataaaaaaacctgtGTGTAAAAGAATGAGAAGAAATAATAGAACAGGACATAATGAGAGAGTCAAGGAATATGTTTCCGAGGGAAGTGATGATAGTATTGATGTTTATTTGGAAGATGCAGAAGAAAGTGAAGAAGATTCTTGTGTGAAGGAAGCTATTGAACTCCTTAACAAACAGAATGACAGGAAACAATCGAAAGCTGAAACTACAAATTCAAAAGTCAAAAACAATCCCAAGGCAAATAAACTAGACGAGGGTATGAAATTGAAACGGAAGATGCCTAACCCAAAGTTGGTGACACAGACAAATGAATCAAAAATGTACAATATGGATGTACCATTGGTTCGCCATACTTGCCAGGAGTGTGGTATATCCTTTATAAATCCCATTTACCTGGGCAGCCATTGGAAGTCGTGTAAGGGTCGGAGGATCCGCTCGTGGGGAGCCCAGCCAGATACGGACGTCGTACAGAATCAAGATGGAAAATTTTCGTGCAACATCTGCTCGTcaacatttaaaaacagatACAATCTCAAGAGGCATTTCATAAgacataaattgTCTCAACTTCAAAATGATGAAAATGAAATGAACACAATCATATCGGTCATGAAAGATCCATTGaatgatgataataatgaaTCATCATCGGCTGGTTCCAATGTCAATGCagcagataaaaataattttattacaatggAATCTGTCAATGATACTGGTATTGTTGTATCAAGTATCAAAGTGGAGGGTCATCAAGATTCATCTAATGACACATCAGACAGAAGTCAAGTTTCATTAAATGACCCAACTGCCGATATTGGCACAAACTCTATATCTGAAATTCCATCAAATAACAACTCTGTTAAATTCAGTGTTTCCCTTGTGTTGAGCGATATTCCTGCGTCAGAAGTAATACTAAAAGAGGGAGTACATTGTGACCAATGTGACAGAACATACAAGACTATAGATGCTTTATCTTACCATGTGCAGTACGTTCATAAAGACAAAGGCTATTCAATTGTATGTAACGTCTGTCCGATGACATTCAAAGGTACACGCCATTTAGCAGAGCATGTCAAGCTAGATCATAAAGGTACGATGAGTGAAGGTCGCAATTATTACTTGGCCACTACCAGTGagttaaaaaagtataaatatcCAAAGGAAATCGATTTGAGATTATTTATGTGCAAAATATGCTCAAAGATATTTCCCACACCACAAAAACTCAAGGCGCACAGACACAAATCCACATCTGATGTATCAATTTTGTCTCTCATAGTCCAGAAAGACATAAAGAAAGTGGATGGACAGTATGTCTGCAAGATCTGCGGAAAAAATTATAAGAGTTATAATTCCATCCATTGTCATTTAATAAATCACAGTGGCATAAAACCATATGAATGTGATATATGCTCAAAACGTTTTGCCACCAAGAAGGTACTCTATTATCACATACAAAATCACTATCAGCCCAAAGAGTACATTTGTGAAGTGTGCGGCCAAACCTTCAAACTACGCAAAAGCATGTATCGCCACAAAAATTTACACGCTGGACATAAACCACATAAATGTGAAGTATGCGGGAAAGCTTTTCATTTTGCCTACATGAAAAGGGTGCACATGAGAACGCACACGGtcCAAAAAAAGTCTAAAATGGATACACCTAATATACTTTCACCTGTTAATGCCATTCAAAAGTCAGACGAAATCACAGAATCCAATATTACAATGAAGTATGTCTCGCTTGATAATTCATCTGgACAACACAAAGACTCAATGGAAGGACTCAGTTCTTCAATTTTTACCATCAAATTCATATCAGAGACCATTGAGAAGATAATTGAACTACTTGATGAGTTAGTTGCGAGAGATAAAAACAGATCAAGAGCAGATAGCGTGAAGAAGGGCGTGTTGGAGGCCATCTCCTGCTACCAAATCCTGATTGACAACCCAAAACTGCTCAATAACAAAGacagtgttatattttttatcaatgtaAGTTCTACTGTATCTGCATCACCAAACAATCCCAACGAAGAAAagctaaatatttcaaaagacaATTCTGAATCTGCACTGAAAGAGagcaaaagtaaaataaaaaaacctgtGTGTAAACGAATGAGAAGGAATAATAGAACAGGACATAATGTGGAGAGAGTCAAGGAATATGTTTCCGAGGGAAGTGATGATAGTATTGATGTTTATTTGGAAGATGCAGAAGAAAGTGAAGAAGATTCTTGTGTGAAGGAAGCTATTGAACTCCTTAACAAACAGAATGACAGGAAACAATCGAAAGCTGAAACTACAAATTCAAAAGTCAAATACAATCCCAAGCCAAATAAACTAGACGAGGGTATGAAATTGAAACGGAAGATGCCTAACCCAAAGTTGGTGACACAGACATATGAATCAAAAATGTACAATATGGATGTACCATTGGTTCGCCATACTTGCCAGGAGTGTGGTATATCCTTTATAAATCCCATTTACCTGGGCAGCCATTGGAAGTCGTGTAAGGGTCGGAGGATCCGCTCGTGGGGAGCCCAGCCAGATACGGACGTCGTACAGAATCAAGATGGAAAATTTTCGTGCAACATCTGCTCGTcaacatttaaaaacagatACAATCTCAAGAGGCATTTCATAAgacataaatTGTCTCAActtcaaaatgataaaaatgaaatgaacaAAATGATATCGGTCATGAAAGATCCATCGAATAATGATCATAATGAATCATCATCAGCTGGTTCCAATGTCAATACagcagataaaaataattttaatacaatggAATCTGTCAATGATACTGGTATTGTTTTATCAAGTAACAAAGTGCAGGGTCTTCAAGATTCATCTAACAACACATCAGACAGAAGTCAAGTTTCATTGAATGACCCAACTGCCGATATTGGCACAAACTCTATATCTGAAATTCCATCAAATAACAACTCTGTTAAATTCAGTGTTTCCCTTGTGTTGAGCGATATTCCTGCGTCAGAAGTAATACTAAAAGAGGGAGTACATTGTGACCAATGTGACAGAACATACAAGACTATAGATGCTTTATCTTACCATGTGCAGTACGTTCATAAAGACAAAGGCTATTCAATTGTATGTAACGTCTGTCCGATGACATTCAAAGGTACACGCCATTTAGCAGAGCATGTCAAGCTAGATCATAAAGTAACGATGAGTGAAGGTCGCAATTATTACTTGGCCACTACCAGTGagttaaaaaagtataaatatcCAAAGGAAATCGATTTGAGATTATTTATGTGCAAAATATGCTCAAAGATATTTCCCACACCACAAAAACTCAAGGCGCACAGACACAAATCCACATCTGATGTATCAATTTTGTCTCTCATAGTCCAGAAAGACATAAAGAAAGTGGATGGACAGTATGTCTGCAAGATCTGCGGAAAAAATTATAAGAGTTATAATTCCATCCATTGTCATTTAATAAATCACAGTGGCATAAAACCATATGAATGTGATATATGCTCAAAACGTTTTGCCACCAAGAAGGTACTCTATTATCACATACAAAATCACTATCAGCCCAAAGAGTACATTTGTGAAGTGTGCGGCCAAACCTTCAAACTACGCAAAAGCATGTATCGCCACAAAAATTTACACGCTGGACATAAACCACATAAATGTGAAGTATGCGGGAAAGCTTTTCATTTTGCCTACATGAAAAGGGTGCACATGAGAACGCACACGGGTGAAAAGCCCTACGTCTGCGATATGTGTCCTCAGAATTTTAGCGATCGAAGAGGATTCTTGGGacatataaataaacatctGGGGATCAAACCGTACAAATGTGATCAATGCGATGcggcatttattttcaaaaagtgTCTAAACAAACATAAATTAGAACACACAGATTGTAGAAATAAGTTAATGTAA
Protein Sequence
MDTPNILSPINAIQKSDEITESNITMKYVSLDNSSGQHKDSMEGLSSSIFTIKFISETIEKIIELLDELVARDKNRSRADSVKKGVLEAISCYQILIDNPKLLNNKDSVIFFINVSSTESASPNNPNEEKLNISKDNSESALKGSKSKIKKPVCKRMRRNNRTGHNERVKEYVSEGSDDSIDVYLEDAEESEEDSCVKEAIELLNKQNDRKQSKAETTNSKVKNNPKANKLDEGMKLKRKMPNPKLVTQTNESKMYNMDVPLVRHTCQECGISFINPIYLGSHWKSCKGRRIRSWGAQPDTDVVQNQDGKFSCNICSSTFKNRYNLKRHFIRHKLSQLQNDENEMNTIISVMKDPLNDDNNESSSAGSNVNAADKNNFITMESVNDTGIVVSSIKVEGHQDSSNDTSDRSQVSLNDPTADIGTNSISEIPSNNNSVKFSVSLVLSDIPASEVILKEGVHCDQCDRTYKTIDALSYHVQYVHKDKGYSIVCNVCPMTFKGTRHLAEHVKLDHKGTMSEGRNYYLATTSELKKYKYPKEIDLRLFMCKICSKIFPTPQKLKAHRHKSTSDVSILSLIVQKDIKKVDGQYVCKICGKNYKSYNSIHCHLINHSGIKPYECDICSKRFATKKVLYYHIQNHYQPKEYICEVCGQTFKLRKSMYRHKNLHAGHKPHKCEVCGKAFHFAYMKRVHMRTHTVQKKSKMDTPNILSPVNAIQKSDEITESNITMKYVSLDNSSGQHKDSMEGLSSSIFTIKFISETIEKIIELLDELVARDKNRSRADSVKKGVLEAISCYQILIDNPKLLNNKDSVIFFINVSSTVSASPNNPNEEKLNISKDNSESALKESKSKIKKPVCKRMRRNNRTGHNVERVKEYVSEGSDDSIDVYLEDAEESEEDSCVKEAIELLNKQNDRKQSKAETTNSKVKYNPKPNKLDEGMKLKRKMPNPKLVTQTYESKMYNMDVPLVRHTCQECGISFINPIYLGSHWKSCKGRRIRSWGAQPDTDVVQNQDGKFSCNICSSTFKNRYNLKRHFIRHKLSQLQNDKNEMNKMISVMKDPSNNDHNESSSAGSNVNTADKNNFNTMESVNDTGIVLSSNKVQGLQDSSNNTSDRSQVSLNDPTADIGTNSISEIPSNNNSVKFSVSLVLSDIPASEVILKEGVHCDQCDRTYKTIDALSYHVQYVHKDKGYSIVCNVCPMTFKGTRHLAEHVKLDHKVTMSEGRNYYLATTSELKKYKYPKEIDLRLFMCKICSKIFPTPQKLKAHRHKSTSDVSILSLIVQKDIKKVDGQYVCKICGKNYKSYNSIHCHLINHSGIKPYECDICSKRFATKKVLYYHIQNHYQPKEYICEVCGQTFKLRKSMYRHKNLHAGHKPHKCEVCGKAFHFAYMKRVHMRTHTGEKPYVCDMCPQNFSDRRGFLGHINKHLGIKPYKCDQCDAAFIFKKCLNKHKLEHTDCRNKLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-